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Clinical Chemistry 42: 227-231, 1996;
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Clinical Chemistry, Vol 42, 227-231, Copyright © 1996 by American Association for Clinical Chemistry

Rapid competitive PCR determination of relative gene expression in limiting tissue samples

YH Jiang, LA Davidson, JR Lupton and RS Chapkin
Faculty of Nutrition, Molecular and Cell Biology Group, Texas A&M University, College Station, 77843-2471, USA.

Reverse transcriptase (RT)-PCR is widely used to study gene transcription in many biological systems. Despite the development of a variety of procedures, quantification of RT-PCR products remains difficult, particularly when processing a large number of samples. Therefore, we developed a novel alternative PCR technique that we term "rapid competitive PCR" (RC-PCR), designed to study the relative expression of specific genes in a large number of small tissue biopsies. RC-PCR is characterized by measuring relative gene expression at the mRNA level of two or more samples with a nonradioactive assay based on competitive PCR amplification between identical sequences of internal standard and target cDNA. Only a single reaction tube per sample is used in this technique, and it was validated by comparing RC- PCR of protein kinase C zeta and alpha expression in rat colonic mucosa samples with competitive RT-PCR analysis (requiring 6-8 reaction tubes per sample). We conclude that RC-PCR is a simple, rapid, highly sensitive technique that is capable of detecting less than twofold differences in mRNA expression.


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