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Clinical Chemistry 48: 1377-1382, 2002;
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(Clinical Chemistry. 2002;48:1377-1382.)
© 2002 American Association for Clinical Chemistry, Inc.

Genotyping of the Common Haptoglobin Hp 1/2 Polymorphism Based on PCR

Werner Koch1a, Wolfgang Latz1, Marianne Eichinger1, Ariel Roguin2, Andrew P. Levy2, Albert Schömig1 and Adnan Kastrati1

1 Deutsches Herzzentrum München and 1. Medizinische Klinik rechts der Isar, Technische Universität München, D-80636 München, Germany.

2 Technion—Israel Institute of Technology, The Bruce Rappaport Faculty of Medicine, Haifa, Israel.

aAddress correspondence to this author at: Deutsches Herzzentrum München, Experimentelle Kardiologie, Lazarettstrasse 36, D-80636 Munich, Germany. Fax 49-89-1218-3053; e-mail wkoch{at}dhm.mhn.de.

Background: A genetically defined molecular heterogeneity of haptoglobin, characterized by the major phenotypic forms Hp 1-1, Hp 2-1, and Hp 2-2, has been associated with distinct clinical manifestations. To enable the use of DNA samples for the study of this polymorphism, we established a haptoglobin genotyping method based on PCR.

Methods: Taking advantage of the selectivity of PCR, we amplified DNA segments specifically representing haptoglobin alleles Hp 1 and Hp 2 from genomic DNA. The products were analyzed by agarose gel electrophoresis. Haptoglobin phenotyping of plasma samples was performed by polyacrylamide gel electrophoresis and peroxidase staining.

Results: Exploiting the known size difference between Hp 1 and Hp 2, we amplified allele-specific DNA molecules with one pair of oligonucleotide primers. As an alternative, we used separate primer pairs to generate amplification products indicative of alleles Hp 1 and Hp 2. Because of the primer design, genotype determination was not compromised by sequence variations specifying haptoglobin allele subtypes S and F. For the same reason, the sequence similarity between the haptoglobin gene and the haptoglobin-related gene did not interfere with the accuracy of genotyping. Analysis with restriction enzymes demonstrated the authenticity of the allele-specific DNA products. Haptoglobin DNA genotyping and protein phenotyping, performed in parallel, yielded fully corresponding results. In a group of 249 individuals, the haptoglobin genotype distribution was as follows: 14.5% Hp 1-1, 48.2% Hp 2-1, and 37.3% Hp 2-2.

Conclusion: The new method can be used for genotyping of a common haptoglobin polymorphism.




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