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Articles |
tryptophan mutation associated with a unique haplotype
1
Department of Pathology, National University of Singapore, Singapore 119260.
2
Department of Laboratory Medicine, National University
Hospital, Singapore 119074.
3
Pantai Medical Centre, Kuala Lumpur, Malaysia.
a Author for correspondence. Fax (065)7780671; e-mail patkoaye{at}nus.sg
| Abstract |
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TGG mutation,
resulting in an Arg3500-to-Trp substitution. This is the
second published report of such an independent mutation involving the
same codon as the established Arg3500-to-Gln mutation. The
two other mutations detected, CTT3517
CTG and
GCC3527
GCT, resulted in degenerate codons with no
amino acid substitutions. All four mutations were associated with a
unique apo B haplotype, different from those found in Caucasian FDB
patients but concurring with that previously reported for two other
Asians with FDB.
Key Words: indexing terms: population screening genetic screening heritable disorders
| Introduction |
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That a defect in the ligand apo B-100 gene could produce a phenotype
like that of clinical FH was first observed by Vega and Grundy in 1986
(3) in five subjects with moderate hypercholesterolemia.
These subjects had substantially reduced fractional catabolic rates of
autologous LDL but average catabolic rates of homologous LDL,
indicating the presence of functional LDL receptors. The LDL from one
of these patients was subsequently shown to possess only 32% of
average binding affinity to LDL receptors on cultured fibroblasts
(4); this condition, familial defective apolipoprotein
B-100 (FDB), is a genetic disorder associated with moderately increased
plasma LDL cholesterol (LDL-c) concentrations and accelerated
atherosclerosis (5)(6)(7). The point mutation
arising from a single base change in the apo B-100 gene sequence, a CGG
CAG change in codon 3500, with resulting Arg-to-Gln switch in the
apo B-100 protein, has been established as the cause of FDB
(4)(8). FDB is transmitted by autosomal
codominant inheritance; the incidence of heterozygotes in most
populations is 1:5001:700, similar to that of FH
(5)(7).
LDL particles containing apo B-100 with Gln at amino acid residue 3500
located within the putative receptor-binding region (9)
have reduced binding affinity for the LDL receptor
(4)(10). The resulting diminished rate of
clearance of plasma LDL leads to hypercholesterolemia. Three other
mutations in the LDL-receptorbinding region of the apo B-100 protein,
at codons 3480, 3531, and 3500, have been described:
Arg3480
Pro (11); Arg3531
Cys (12); and Arg3500
Trp
(13). The latter two mutations resulted in decreased
LDL-receptorbinding affinity of the altered apo B-100 protein ligand
(12)(13). The importance of Arg at position
3500 and its flanking regions to the functional integrity of apo B-100
as the ligand moiety for LDL receptor recognition is confirmed by
studies with monoclonal antibodies to specific regions of the apo B-100
protein to investigate the available epitopes when LDL is bound to its
receptor (14).
Subjects with FDB are clinically indistinguishable from those with FH, although the former tend to have less severe hypercholesterolemia (7)(15)(16). In heterozygous FDB subjects, residual binding affinity of the unaltered LDL particles (only half of their LDL carries the defective apo B-100 protein) permits substantial LDL catabolism via the LDL receptor pathway. Also, the rate of removal of VLDL remnants, the precursors of LDL, by the hepatic LDL receptor is not affected, given that the interaction of the VLDL remnants is mediated by recognition of the apo E ligand (17). Hence the proportion of VLDL remnants converted to LDL should not change.
We systematically screened a mixed Asian cohort for underlying genetic causes by the denaturing gradient-gel electrophoresis (DGGE) method (11). The putative receptor-binding region from codon 3456 to codon 3553 of the apo B-100 gene was screened, in an attempt to identify previously established and any new functional mutations causally linked to FDB. We also characterized the apo B-100 haplotype on the basis of the inherited traits at five polymorphic sites on the gene, so as to establish the founder origins of any mutations detected. The genotypes at the apo E and the LDL receptor gene exon 8 StuI polymorphic loci on chromosome 19, two interrelated inherited traits, were also studied to assess their effect, if any, on LDL-binding affinity.
| Materials and Methods |
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lipid determinations
Serum (total) cholesterol and triglyceride were measured by
commercial enzymatic assays on the Ektachem 750 automated analyzer
(Johnson and Johnson, Rochester, NY). HDL cholesterol (HDL-c) was
measured on the Reflotron (Boehringer Mannheim, Mannheim, Germany),
after dextran sulfate precipitation and removal of other lipid
fractions. Apo A-I and apo B were quantified by immunonephelometry on
the Beckman Array 2.0 protein analyzer (Beckman, Brea, CA), and
lipoprotein(a) was quantified by the Macra enzyme immunoassay from
Strategic Diagnostics (Newark, DE). LDL-c was estimated indirectly by
application of the Friedewald formula (18).
dna extraction
DNA was extracted from leukocytes, as previously described
(19). The DNA pellet was redissolved in 10 mmol/L
Tris-HCl, 0.1 mmol/L EDTA buffer, pH 8.0, to a final concentration of
~300 ng/µL and stored at -70 °C.
pcr amplification and dgge screening
The region containing nucleotides 10 55110 892 (corresponding
to codons 34483561) of exon 26 of the apo B-100 gene was amplified as
described by Nissen et al. (11), with slight modification.
The sequences of the two primers are
5'-CGCCCGCCGCGCCCCGCGCCCGTCCCGCCGCCCCCGCCCGGGAGCAGTTGACCACAAGCTTAGC-3',
with a 40-bp GC clamp at the 5' end, and
5'-GGTGGCTTTGCTTGTATGTTCTCC-3'. Only the region from codon 3456 to
codon 3553 lies between the primers and is screened for mutations by
the DGGE technique. Briefly, the PCR mixture (final volume, 25 µL)
contained 300 ng of DNA, 60 pmol of each primer, 200 µmol/L of each
deoxynucleotide triphosphate, 1.5 mmol/L MgCl2, and 1 U of
the Taq polymerase (Promega, Madison, WI) in a buffer supplied by the
same manufacturer. The mixture was heated in a Perkin-Elmer-Cetus
(Norwalk, CT) TL 480 thermocycler to 95 °C for 5 min, then 40 cycles
of 94 °C (1 min) and 68 °C (1 min), followed by a final 10-min
stage at 72 °C and then incubated at 65 °C for 1 h and at
37 °C for 1 h longer to assist formation of heteroduplexes.
The PCR products were analyzed with a 6% polyacrylamide gel (acrylamide:bis-acrylamide ratio, 37.5:1) on a 2060% denaturant gradient (100% denaturant consists of 400 mL/L formamide and 7 mol/L urea). Electrophoresis was performed for 6 h at 150 V in a bath of Tris-acetateEDTA buffer (Tris-acetate 40 mmol/L, EDTA 1 mmol/L, pH 8.0) heated to 60 °C. The gradient-gel former and the electrophoresis apparatus were part of the Bio-Rad D-Gene system (Hercules, CA).
dna sequencing
Mutations detected by the DGGE screen were confirmed by DNA
sequencing. Genomic DNA was amplified with the same primers but without
the 40-bp GC clamp. The PCR mixture (as described above) was denatured
at 95 °C for 5 min, followed by 25 cycles of 94 °C (1 min),
60 °C (1 min), and 72 °C (1 min), with a final 10-min elongation
step at 72 °C. The PCR products were cleaned with Prep-A-Gene
(Bio-Rad) and cycle-sequenced on a ABI Prism 377 automated sequencer
(Perkin-Elmer) according to the protocol described by the manufacturer.
apo b-100 haplotype analysis
Five polymorphic loci on the apo B-100 gene were studied. The apo
B signal peptide insertion/deletion (I/D) polymorphism in exon 1 of the
gene was studied as previously described (20). The
XbaI and MspI polymorphisms in exon 26 and the
EcoRI polymorphism in exon 29 were studied with primers by
Boerwinkle et al. (21). The minisatellite-length
polymorphism caused by variable number of tandem repeats (VNTR) located
~200 bp 3' of the apo B-100 gene was analyzed as previously described
(21).
apo e genotyping and ldl receptor stui polymorphism
analysis
The genomic DNA samples were analyzed for apo E genotypes and the
LDL receptor gene exon 8 StuI polymorphism, two inherited
traits that may influence the phenotypic expression of FDB. Apo E was
genotyped by the method of Hixson and Vernier (22), and
LDL receptor exon 8 StuI polymorphism was genotyped as
described by Gudnason et al. (23).
| Results |
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3
3 genotype (wild-type)
for the apo E polymorphism and Ala/Ala for the LDL receptor gene exon 8
StuI polymorphism. The small number of subjects precluded
statistical computation of the effects of the mutations on plasma lipid
concentrations.
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Subject 1 was diagnosed with hypertriglyceridemia. Subject 2 had hypercholesterolemia (6.9 and 7.8 mmol/L on two occasions in 1990), diabetes since 1981, high blood pressure, right coronary artery lesion, and a positive treadmill test. She responded well to treatment and reverted to an average plasma lipid profile within 6 months. Subject 3 had no overt clinical symptoms, despite high plasma cholesterol, triglyceride, and apo B concentrations. His parents, two brothers, and a sister were healthy. Subject 4 had xanthelasma, and several members of her family were hypercholesterolemic (>6.2 mmol/L), with one sibling (plasma total cholesterol, 8.0 mmol/L) having undergone coronary artery bypass surgery before age 50. Except for subject 2, none of the other subjects had coronary heart disease, as documented by negative coronary angiograms.
The DGGE-based screening showed a single-band pattern (indicating no
mutations within the codon 34563550 region) for all but 4 subjects
(n = 159) who had 4-band patterns (indicating the presence of
mutations in this region). Different mutations gave rise to migration
rates of the four component bands (Fig. 1
). The mutations in the four subjects were confirmed by DNA
sequencing (Fig. 2
). The location and effect of the mutation in each case are
shown in Table 3
. The mutation in subject 1 was found in codon 3517 (CTT
CTG). This was a degeneracy codon change that did not result in a
change of the coded amino acid leucine. Subjects 2 and 4 have the same
mutation in codon 3500 (CGG
TGG), which produced a change from the
positively charged Arg to the nonpolar Trp in the encoded amino acid
sequence. The mutation in subject 3 again involved a degeneracy codon
(GCC
GCT), both coding for the amino acid alanine. Because base
substitutions in subjects 1 and 3 did not involve changes in amino
acids in the translated apo B-100 protein, these subjects could not be
considered as having FDB.
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The first two (slower-moving) bands in the four-band pattern are heteroduplexes formed by the pairing of a mutant strand with a normal/wild-type strand. The single-basepair mismatch lowered the melting temperature (Tm) of the heteroduplexes. Earlier denaturation of the less-than-100%-homologous heteroduplexes in a denaturing gel retarded their migration during electrophoresis. The lowest (fastest-moving) band in subjects 2, 3, and 4 corresponds to the single band found in the apparently healthy control, a homoduplex comprising two wild-type strands. Mutations found in subjects 2, 3, and 4 involved substitution of a C with a T resulting in a lower Tm and earlier denaturation. Thus, the homoduplex mutant band is at a higher position in the gel than the average/wild-type band because of its slower migration rate. Subject 1 differed in having a substitution of a T by a G causing a rise in the Tm of the homoduplex. The mutant strands in this case are therefore harder to denature and thus migrate further in a denaturing gel.
haplotype analysis
All four subjects had the same haplotype,
I-DIns/XbaI-/MspI+/EcoRI+/VNTRS,
based on five polymorphic sites on the apo B gene (Table 4
), where + and - indicate the presence or absence of the
restriction sites, and S refers to alleles with <43 repeats (L stands
for alleles with
43 repeats). The alleles of three subjects had 35
and 35 repeats at the apo B-100 3'-VNTR; subject 3 had alleles with 35
and 37 repeats. Three were heterozygous with regard to the 9-bp
insertion/deletion polymorphism in the apo B-100 signal peptide;
subject 3 was homozygous for the insertion alleles.
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| Discussion |
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CAG mutation at codon 3500
(8), which has been established as a cause for FDB in
several populations (5), three other mutations have been
identified in this region. Only two of these have been linked to
functionally reduced LDL-receptorbinding affinity and consequent
hypercholesterolemia: a CGG
TGG coding change at codon 3500
(13); and a CGC
TGC change at codon 3531
(12). The clinical import of the third single-base change,
CGG
CCG at codon 3480 (11), is yet to be determined.
Another mutation, a C-to-T change on codon 4016 in exon 29 found in one
kindred and known as apo B-100 Hopkins, was not linked to a
hyperlipidemic phenotype (24). Its location outside the
putative LDL-receptorbinding domain of the apo B-100 gene may provide
some explanation for the lack of atherogenic phenotypic expression. We used the GC-clamped DGGE method described by Nissen et al. (11) to screen for unknown sequence mutations within codons 3456 and 3553. The specificity and sensitivity of this method are discussed elsewhere (25)(26).
Two of our three mutations, a CCT
CTG in codon 3517 and a GCC
GCT in codon 3527, although not clinically important because they are
degenerate codon mutations, have nonetheless not been previously
reported. The third mutation, a CGG
TGG at codon 3500 causing a
substitution of Arg to Trp, is similar to that reported by Gaffney et
al. (13), involving the same codon as the original
FDB-coding mutation, CGG
CAG or CAA. The latter, producing an
Arg-to-Gln change, is the predominant mutation reported in Caucasians
(27).
The codon for Arg, CGG, contains the hypermutable CG dinucleotide,
frequently associated with point mutations (CG
TG or CG
CA) in
the same codon of various genes, such as the hemoglobin gene cluster
and the Factor III gene (28). Likewise, in Alzheimer
disease, two clinically important mutations map to the same codon 717
of the ß-amyloid precursor protein gene (29). Similar
mutations involving other Arg residues in the LDL-receptorbinding
region of the apo B-100 gene may also exist.
Our study population did not include a subject with the classic
Arg3500-to-Gln mutation, but we found two
subjects with Arg3500-to-Trp mutations, suggesting that the
prevalent mutation in the Malaysian population is the
Arg3500-to-Trp type. Our subjects are the third and fourth
index cases of this new mutation reported to date. The first cases,
reported in 1995 (13), were from Scotland; one was of
Asian and the other of Scottish descent (Table 4
).
Substitution of the Arg (with a positively charged polar side chain) by Gln or Trp or Cys (with an uncharged nonpolar side chain) reduces the binding affinity of the apo B-100 to the LDL receptor (4)(12)(13), as demonstrated by a dual-label fibroblast binding assay (12), a cell culture expression system for the synthesis of recombinant human LDL containing apo B with the mutation at codon 3500 (30), or the U937 monocyte proliferation assay (31)(32). Reduced LDL binding affinity in subjects 2 and 4 in our study is thus expected, as reported by Gaffney et al. (13). Detailed characterization of the phenotypic expression of this mutation in our two affected individuals is in progress.
The apo E polymorphism has been associated with variation in plasma
lipid concentrations (33)(34). Compared with
the
3 allele, reduced LDL-c concentrations frequently accompanied
the presence of the
2 allele, and higher LDL-c concentrations, the
4 allele [33, 34, and our unpublished
data]. The LDL receptor gene exon 8 StuI polymorphism is
caused by substitution of a G for an A in codon 370 (35).
This changes the amino acid Ala to Thr. The Thr allele is associated
with high plasma total cholesterol and LDL-c in certain populations
(23). Because our four subjects have
3
3 and Ala/Ala
genotypes, their increased cholesterol concentrations are not
attributable to the apo E or the LDL receptor gene StuI
polymorphisms.
Two recent trials have shown that treatment with a hydroxymethylglutaryl-CoA reductase inhibitor, pravastatin, reduces plasma total cholesterol and LDL-c (2025%) in FDB patients more than does a fibrate, gemfibrozil (46%, P <0.0001) (17). However, the fibrate lowered triglycerides by 25% and elevated HDL-c in these subjects by 11% (36), while the effects of pravastatin on these two interrelated variables were significantly smaller (P <0.0001). These studies also showed that the LDL-c-lowering effect of pravastatin in patients with FDB was similar to that observed in patients with FH. Because of the deleterious effects of untreated familial forms of isolated hypercholesterolemia, it is important to identify FDB and FH subjects early and to treat them with suitable lipid-lowering drugs and a lipid-lowering diet. The DGGE-based screening method we have adopted (11) appears to be a good choice for detection of FDB in high-risk groups.
FDB has been associated with a certain haplotype of the apo B-100 gene, 194 (37). The Arg3500-to-Gln causal mutation was identified on this same haplotype in several Western populations (38)(39)(40)(41), suggesting that this mutation occurred on a single ancestral gene. Haplotype 194 is characterized by XbaI-, MspI+, EcoRI+, the presence of the 5' signal peptide insertion (Ins) allele, and the 49-repeat (according to the nomenclature by Boerwinkle et al. (21) used here) allele of the 3'-VNTR (37). The apo B 3'-VNTR has a 13-allele frequency distribution that follows a bimodal distribution pattern, with peaks at 35 and 49 repeats representing the two main alleles; the other alleles arise from slippage during DNA replication of these two alleles (21). The larger 49 repeat seems to be associated with FDB in Caucasians (37) but not in Asians (13)(42).
The apo B-100 haplotype of our four subjects,
I-DIns/XbaI-/MspI+/EcoRI+/VNTRS,
differed from haplotype 194 but was similar to (though not identical
with) haplotype 195 (42) and reported in a Chinese man
residing in California but born in China, one of two previously
reported FDB cases of Asian descent (13)(42).
Two possible explanations for the unique haplotype associated with the
FDB mutations found in the Asians (Table 4
) are: (a) the
mutations may have arisen from the same ancestral founder gene, but a
rare recombination event at the extreme 3' end of the apo B gene could
have changed the haplotype (42); similar such
recombinations have not been observed in this region of the apo B gene
since the genesis of the Ag (x/y) polymorphism
(43), making it unlikely that either haplotype could have
arisen from the other by recombination between homologous chromosomes;
(b) the causal mutations for FDB associated with the Asian
haplotype 195 might have arisen independently at any of the
hypervariable CG dinucleotides located in codons 30004000. Most point
mutations in the hemoglobin gene cluster, for example, are associated
with a single haplotype, but a few point mutations were observed on a
different haplotype from subjects in Southeast Asia (44).
In the mutations causing FDB, Asian patients are probably descended
from a different founder ancestor in whom the particular mutation had
occurred independently on a different haplotype on one or several
occasions, quite unrelated to the mutational event(s) that had occurred
on the haplotype in most Caucasians.
Specific methods detecting only mutations in codon 3500 (such as allele-specific oligonucleotide hybridization or MspI digestion of PCR products) would not detect mutations at other sites within the receptor-binding region. This may explain the low frequency of FDB in the African (45) and Indian (46) populations and the rarity of FDB in the Japanese population (47).
The DGGE-based assay for detecting mutations in the flanking regions of
codon 3500 of the apo B-100 gene allows screening of known and yet
unidentified mutations of FDB. Detection of the
Arg3500
Trp mutation associated with a unique
haplotype in two Malaysian women of different ethnic descent, shortly
after the first report of its occurrence in two subjects of Scottish
and Asian descent, respectively (13), confirms that at
least two independent mutations arising from the same codon with the
hypermutable CG dinucleotide is causally associated with FDB. Our
results suggest that: (a) this may signal a high prevalence
of FDB in the Malaysian population; (b) rather than the
classic FDB mutation, perhaps the alternative codon 3500 mutation
occurs more frequently in Asian patients
three of four patients
reported thus far as having the Arg3500
Trp mutation
(one from the Scotland study and two from this study) are Asians;
(c) all three Asians affected had the same (or a very
similar) apo B haplotype, suggesting that they may all have descended
from the same founder mutation. The mutations in the two female
subjects in our study could also have occurred independently, given
that the afflicted individuals are from different racial origins. The
ethnicity and country of origin of the Asian patient in the Scotland
study was not stated. Larger studies involving larger numbers are
needed, and more Asian ethnic groups should be screened for this
mutation to confirm the above observations and to provide answers to
the questions they raise.
| Acknowledgments |
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Gln mutation was a gift from Ian Day,
Division of Cardiovascular Genetics, Department of Medicine, University
College London Medical School, The Rayne Institute, London, UK. Clive
R. Pullinger, Cardiovascular Research Institute, University of
California, San Francisco, CA, generously supplied DNA samples with the
Arg3531
Cys and the Arg3480
Pro
mutations. Henrik Nissen, Department of Clinical Chemistry, Odense
University, Odense C, Denmark, provided the technical expertise to
refine the DGGE electrophoretogram shown in Fig. 1| Footnotes |
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