Clinical Chemistry 43: 1188-1195, 1997;
(Clinical Chemistry. 1997;43:1188-1195.)
© 1997 American Association for Clinical Chemistry, Inc.
Serum concentrations of free ubiquitin and multiubiquitin chains
Koji Takada1,a,
Hidekazu Nasu4,
Nozomu Hibi4,
Yutaka Tsukada4,
Toshiaki Shibasaki2,
Kiyotaka Fujise3,
Masahiro Fujimuro5,
Hitoshi Sawada5,
Hideyoshi Yokosawa5 and
Kiyoshi Ohkawa1
1
Department of Biochemistry (I),
2
Department of Internal Medicine (II), and
3
Department of Internal Medicine (Kashiwa Hospital), Jikei University School of Medicine, Minato-ku, Tokyo 105, Japan.
4
Department of Research Laboratory, SRL, Inc.,
Komiya-cho, Hachioji-shi, Tokyo 192, Japan.
5
Department of Biochemistry, Faculty of Pharmaceutical
Sciences, Hokkaido University, Sapporo 060, Japan.
a Author for correspondence. Fax 81-3-3435-1922;
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Abstract
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Ubiquitin, which can conjugate with cellular proteins, is classified
into two forms: free ubiquitin and multiubiquitin chains. The
latter is active as a signal for degradation of the targeted proteins.
We found both forms in human serum and, using two immunoassays,
quantitated them in sera from healthy subjects and patients with some
diseases. Because of putative leakage of erythrocyte ubiquitin,
hemolytic serum and serum obtained after long incubation (>12 h) of
blood at room temperature were excluded. Serum concentrations of
multiubiquitin chains and free ubiquitin were substantially higher in
rheumatoid arthritis and hemodialysis patients, respectively, than
healthy subjects. Additionally, in acute viral hepatitis, serum
multiubiquitin chain concentrations were increased in the acute phase,
decreased in the recovery phase, and correlated with alanine and
aspartate aminotransferase activities (r = 0.676 and
0.610, P <0.0001 and <0.001, respectively). Therefore,
serum ubiquitin may have prognostic value.
Key Words: indexing terms: radioimmunoassay enzyme-linked immunosorbent assay hemolysis hemodialysis rheumatoid arthritis acute viral hepatitis
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Introduction
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Ubiquitin, a 76-amino-acid protein, is present in the cytoplasm
and nucleus of eukaryotic cells and can be covalently conjugated to
cellular proteins by the enzymes of the ubiquitin conjugating system
(1)(2). In this process, several ubiquitin
monomers are usually ligated sequentially to another ubiquitin moiety
already linked to the protein, forming multiubiquitin chains
(3). The multiubiquitin chain acts as a signal to
induce degradation of the target proteins by 26S proteasome
(2)(3). The ubiquitin-mediated proteolysis, a
major pathway for selective protein degradation, plays a variety of
regulatory roles in cellular processes, including stress response
(4)(5)(6), cell cycle
(7)(8)(9), gene expression (10) and
apoptosis (11). Ubiquitin may additionally be involved
in the pathogenesis of various diseases. Intracellular accumulation of
ubiquitin or ubiquitin conjugates has been detected in patients
with neurodegenerative diseases (12)(13),
muscular diseases (14), brain ischemia
(15)(16), and cancers (17).
Extracellular ubiquitin has been suggested to be involved in amyloid
formation (18) and growth of hematopoietic cells
(19).
Cellular concentrations of the two forms of ubiquitin, free ubiquitin
and multiubiquitin chains, are closely linked and change with various
cellular events; e.g., heat stress increases multiubiquitin chains with
the consumption of free ubiquitin
(5)(6)(20)(21). Thus,
quantitation of both ubiquitin forms is valuable in investigations of
ubiquitin-mediated phenomena in vivo. Several studies have revealed
that ubiquitin concentrations in body fluids are increased in patients
with various diseases: serum ubiquitin in parasitic and allergic
disease (22), plasma ubiquitin in chronic renal failure,
especially in cases undergoing hemodialysis treatment
(23), and cerebrospinal fluid ubiquitin in
CreutzfeldtJakob disease (24) and Alzheimer disease
(25)(26). However, these studies have not been
entirely convincing because they have not determined which form of
ubiquitin is preferentially being detected. Origin and metabolism of
ubiquitin in the body fluid also have not been clarified.
We have recently developed two kinds of immunoassay: an RIA that
preferentially detects free ubiquitin (21), and an ELISA
specific to the multiubiquitin chains (20). In the present
study, by using these assays, we have quantitated both ubiquitin forms
in human serum from healthy subjects and patients with various diseases
to find possible clinical application of the assays.
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Materials and Methods
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blood collection and serum preparation
Blood was obtained from three healthy men (ages 28, 32, and 35
years) for assessment of serum processing conditions in the ubiquitin
quantitation. Ten milliliters of blood was drawn from the antecubital
vein and immediately aliquoted to check effects of the following
conditions: (a) time from blood drawing to separation of the
serum by centrifugation (0.56 h); (b) temperature of blood
during the above conditions (room temperature or 4 °C);
(c) time of storage of serum at 4 °C before freezing
(0.510 h); (d) repeated freezing and thawing (to room
temperature for 30 min/thaw) of serum.
We also collected blood from two groups of healthy volunteers (60 for
group 1 and 96 for group 2), patients with systemic lupus erythematosus
(SLE),1
rheumatoid arthritis (RA), motor neuron disease (MND), and
multiple sclerosis (MS) and patients on hemodialysis for chronic renal
failure. Patients with SLE and RA were diagnosed according to the
American Rheumatism Association criteria
(27)(28). Thirty-eight SLE patients (18 with
clinically active disease, 20 with inactive disease) and 24 RA patients
(all seropositive) were analyzed. Patients with MND and MS were
diagnosed on the basis of their clinical symptoms, confirmatory
paraclinical and imaging findings, and the exclusion of other
neurological disease processes (29)(30). The
hemodialysis patients had been treated with cuprophane membrane
dialyzers for 0.519.5 years (mean ± SD, 7.1 ± 5.4). In
addition, seven patients (three men and four women, ages 2552 years)
with acute viral hepatitis (AVH) type A, diagnosed by means of a
serological marker of IgM antibody to Hepatitis Virus A, were
investigated. A total of 30 blood samples were obtained serially from
all AVH patients (46 samples/patient) during the acute and recovery
phases of AVH at 114-day intervals for ~1 month. Unless otherwise
stated, blood was kept at room temperature and the resulting serum was
separated by centrifugation within 2 h after the blood collection,
then stored at -75 °C. All hemolytic sera (as determined
macroscopically) were excluded.
reagents and calibration materials
Most of the reagents used were described previously
(20)(21). A reagent kit of Interference Check
A (International Reagents Corp., Kobe, Japan) was used to check the
interference of hyperbilirubinemia, hyperlipemia, and hemolysis in the
immunoassays.
Bovine ubiquitin (Sigma, St. Louis, MO) was applied to a Mono Q column
(Pharmacia Biotech, Uppsala, Sweden) equilibrated with 20 mmol/L
ethanolamine, pH 9.0, and highly purified monoubiquitin was eluted from
the column with a linear gradient of sodium chloride. The
monoubiquitin, dialyzed against phosphate-buffered saline, was
quantified by absorbance at 280 nm (31) and used as a
calibrator for free ubiquitin RIA.
Multiubiquitin chains were prepared as described previously
(20). Briefly, monoubiquitin (10 mg) was incubated
overnight at 37 °C in 100 mmol/L Tris-HCl, pH 9.0, containing 15 ng
of 125I-labeled ubiquitin (4 x 106 cpm), 200 µg
of lysozyme, ubiquitin-ligating enzyme mixtures (100 µg of E1/E2 and
300 µg of E3) (32), 2 U of inorganic pyrophosphatase, 10
mmol/L MgCl2, 1 mmol/L dithiothreitol, and 4 mmol/L ATP in
a total volume of 1 mL. The reaction mixture was applied to a Superdex
200 HR 10/30 gel-filtration column (Pharmacia Biotech) and eluted with
50 mmol/L phosphate buffer, pH 7.2, containing 0.15 mol/L NaCl and 1
g/L 3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate at a
flow rate of 0.5 mL/min. The Mr of fractionated
proteins was estimated by comparing their elution volumes with those of
calibrator proteins (20), and fractions with
Mr >100 000 were selected. A mixture of the
selected fractions, designated as the multiubiquitin chain reference
preparation 1 (MUCRP1) (20), was used to calibrate the
multiubiquitin chain ELISA. The concentration of MUCRP1 estimated from
the recovered 125I-labeled ubiquitin radioactivity was 19
mg of ubiquitin equivalent per liter.
free ubiquitin ria and multiubiquitin chain elisa
RIA and ELISA procedures were described previously
(20)(21). Briefly, in the RIA, 100 µL of
each dilution of the calibrator or the twofold-diluted serum samples
was transferred to respective tubes, and the rabbit antiserum to
ubiquitin (US-1) and 125I-labeled monoubiquitin were added
to the tube (final volume 500 µL) and mixed. After a 20-h incubation
at room temperature, diluted goat antiserum to rabbit
-globulin
containing normal rabbit serum and polyethylene glycol was added and
incubated for an additional 1.5 h. Immune complex was obtained by
centrifugation, and the radioactivity was counted.
In the ELISA, each dilution of the calibrator (MUCRP1) and the
10-fold-diluted samples (100 µL) was transferred to the respective
wells of the microtiter plates, which had been coated with monoclonal
antibody FK2 specific for conjugated ubiquitin (32). The
wells were incubated for 3 h at room temperature and then washed.
One hundred microliters of biotinylated FK2 (4 mg/L) was added to each
well and incubated for 2 h. After washing, 100 µL of a solution
of peroxidase-conjugated streptavidin was added to each well and
incubated for an additional 30 min. After washing, color was developed
with the substrate 3,3',5,5'-tetramethylbenzidine solution (Pierce,
Rockford, IL) and measured at 450 nm. Calibrated curves were fitted by
nonlinear regression analysis by using the computer software GraphPad
PRISM (GraphPad Software, San Diego, CA), and sample concentrations
were determined by interpolation.
We have already described the ranges of the calibration curves, the
minimum detection limits, precision, and reproducibility of both assays
(20)(21). We have also certified that the RIA
is an accurate method for measuring free ubiquitin in serum
(21). Accuracy of the ELISA in measurements of serum
multiubiquitin chains was analyzed by a recovery test and a dilution
test of human serum as described previously (21).
serum fractionation by gel filtration
Proteins in human serum from a healthy man, age 35 years, were
fractionated by gel-filtration chromatography on a Superdex 200 HR
10/30 column. Before the chromatography, lipoproteins that could reduce
the column performance were removed from the serum by dextran sulfate
precipitation (33). The lipoprotein-free serum derived
from 110 µL of the serum was applied to the column and eluted with
the same buffer used for the separation of MUCRP1. The
Mr of the fractionated proteins was estimated as
described above.
preparation of blood cell extracts
Erythrocytes, mononuclear cells, neutrophils, and platelets were
separated from human peripheral blood by the modified method of
Ficoll-Conray density centrifugation (34). We prepared
water-soluble extracts of these cells and estimated their protein
concentration, using the previously described procedures
(20).
laboratory measurements
A sequential multiple automated analyzer (TBA-80 M; Toshiba,
Tokyo, Japan) determined the following analytes in the serum specimens
from AVH patients: aspartate aminotransferase (AST), alanine
aminotransferase (ALT), lactate dehydrogenase (LDH), cholinesterase,
alkaline phosphatase (ALP), leucine aminopeptidase (LAP),
-glutamyltranspeptidase (
-GTP), C-reactive protein (CRP), and
direct bilirubin (DBi).
statistical analysis
Data are expressed as means ± SD. Means were compared by
unpaired t-test unless stated otherwise, and test
comparisons were analyzed by linear regression analysis. These
statistical analyses were performed with GraphPad PRISM computer
software. The diagnostic accuracy was evaluated by ROC curve analysis
with the software GraphROC (35)(36).
Significance was set at P <0.05.
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Results
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assay validation
We carried out tests of recovery and dilution to assess the ELISA
accuracy in measurements of serum multiubiquitin chains. Between 86%
and 117% (96.1% ± 8.84%) of the added multiubiquitin chains
were recovered in the recovery test. In the dilution test, the
estimated multiubiquitin chain values of human sera at different
dilutions were close to the calculated theoretical values (Fig. 1
). These results indicate that the ELISA can be adopted for the
quantitation of serum multiubiquitin chains.
fractionation of human serum and their reactivities in the assays
The lipoprotein-free human serum was fractionated on a
gel-filtration column, and the fractions were analyzed by both
immunoassays (Fig. 2
). The RIA-reactive response showed only one peak whose elution
volume (18.6 mL) was coincident with that of monoubiquitin, a major
form of free ubiquitin. However, the ELISA-reactive fractions were
eluted from 8 to 14 mL and gave several distinct peaks whose
Mr were estimated to be 50 0001 000 000.
This result is compatible with multiubiquitinated proteins showing a
broad size spectrum (37).
interference studies
The addition of hemolysate (containing >0.5 g/L hemoglobin)
greatly increased the estimated concentration of each ubiquitin in the
samples, although highly purified hemoglobin (2 g/L), bilirubin
(20200 mg/L), and a lipid mixture [of egg yolk lecithin (91910
mg/L) and triolein (85850 mg/L)] showed no substantial interference
in the assays (data not shown). Because erythrocytes contain large
amounts of both ubiquitin forms (Table 1
), the interference of the hemolysate may be a result of
ubiquitin derived from erythrocytes.
effects of serum processing conditions
Sera were separated from blood specimens kept for 16 h at room
temperature or 4 °C, and their ubiquitin concentrations were
estimated (Fig. 3
). In the sera prepared at room temperature, both ubiquitin
concentrations progressively increased with the time from blood drawing
to serum separation. The rate of increase of free ubiquitin over time
from blood drawing to serum separation was severalfold greater than
that of multiubiquitin chains. However, in the sera prepared at
4 °C, the concentrations of free ubiquitin and multiubiquitin chains
were not affected by the time for serum separation. Serum specimens
showed no substantial change in free ubiquitin and multiubiquitin
concentrations with storage for 0.510 h at 4 °C and with up to six
freezethaws (data not shown).
serum ubiquitin concentrations in human subjects
To establish the reference range, we analyzed the serum
concentrations of both ubiquitin forms in two groups of healthy
volunteers (Table 2
and Fig. 4
). One was designated "control group 1," in which we kept
the collected blood at 4 °C and separated the serum within 3 h
after the blood collection. The other was designated "control group
2," in which blood was kept at room temperature and the resulting
serum was separated at 56 h after the blood collection. Mean free
ubiquitin concentration in control group 2 was significantly higher
than in control group 1 (P <0.001). Mean multiubiquitin
chain concentration was also significantly, but only slightly, higher
in control group 2 than in control group 1 (P <0.05). There
was no significant correlation between age and the ubiquitin
concentrations (data not shown).

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Figure 4. Serum concentrations of free ubiquitin (A) and
multiubiquitin chains (Multi-Ub chains, # in terms of
MUCRP1) (B) in healthy subjects and patients with various
diseases.
Each ubiquitin value was estimated by the immunoassays. Details of the
samples are described in Table 2
and in Materials and
Methods. CG1, control group 1; CG2, control
group 2; HDia, hemodialysis.
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Because the patient sera were collected as part of a routine clinical
evaluation and may be affected by incubation (up to 2 h) with the
clots at room temperature, it is difficult to compare ubiquitin
concentrations in the patient sera with those in the controls (Fig. 4
).
However, from the results shown in Fig. 3
, we assume that the increase
in ubiquitin induced by the sample processing in the patient sera was
greater than in control group 1 but less than in control group 2. Thus
the following observations suggest that serum ubiquitin concentrations
are changed by several pathological conditions: (a) mean
free ubiquitin concentration in hemodialysis patients was higher than
in control group 2 (P <0.001); (b) mean
multiubiquitin chain concentration in patients with RA was higher than
in control group 2 (P <0.001 by MannWhitney
U-test); (c, d) mean multiubiquitin
chain concentrations in patients with MND (c) or MS
(d) were lower than in control group 1 (P
<0.05). ROC curve analysis was used to determine cutoff values for
observations a, b, c, and
d, estimated to be 171, 4.32, 2.66, and 2.36 µg/L,
respectively (Fig. 5
). These cutoff values were chosen to give the greatest
diagnostic detection limit (0.97, 0.74, 0.59, and 0.50, respectively)
and specificity (0.99, 0.73, 0.80, and 0.88, respectively).

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Figure 5. ROC curves for serum ubiquitin (FUb, free
ubiquitin; MUC, multiubiquitin chains).
Each curve was constructed with combined data from a selected control
group and a selected patient group, as shown in Fig. 4
. The selected
groups are indicated in parentheses. Areas under the curves
(and 95% confidence intervals) were 0.986 (0.9681.00) for FUb in CG2
and HDia, 0.773 (0.6660.880) for MUC in CG2 and RA, 0.689
(0.5630.815) for MUC in CG1 and MND, and 0.738 (0.5930.883) for MUC
in CG1 and MS. Points derived from the cutoff values are indicated by
arrows.
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Concentrations of multiubiquitin chains and free ubiquitin in a
total of 30 serum samples from seven AVH patients were 9.62 ±
4.58 µg/L (in terms of MUCRP1; range 3.5119.2) and 133 ± 57.2
µg/L (range 52.2261), respectively. If the upper limit of the
normal range is defined as mean ± 2 SD of control group 1 or 2
(Table 2
), 77% or 63% of the sera were positive by the multiubiquitin
chain ELISAs, which are comparable with the percentages from the liver
function and enzyme tests (Table 3
). In addition, serum multiubiquitin chain concentrations were
increased in the acute phase and decreased in the recovery phase (a
typical result is shown in Fig. 6
), and correlated significantly with ALT, AST, and LDH
activities (r = 0.676, 0.610, and 0.587; P
<0.0001, <0.001, and <0.01, respectively) (Table 3
and Fig. 7
). Serum concentrations of free ubiquitin correlated weakly only
with concentrations of multiubiquitin chains and CRP (r
= 0.464 and 0.431; P <0.01 and <0.05, respectively).
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Table 3. Positive rates of free ubiquitin, multiubiquitin chains,
and laboratory tests, and correlation between each ubiquitin and the
test data, in sera from patients with acute viral
hepatitis.
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Figure 6. Serial changes of serum concentrations of free ubiquitin
(Free Ub), multiubiquitin chains (Multi-Ub
chains, # in terms of MUCRP1), and liver function and enzyme tests
in the patient with AVH (female, age 25 years).
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Figure 7. Correlation between multiubiquitin chain concentration
(Multi-Ub chains, # in terms of MUCRP1) and ALT () or AST
( ) activity in sera from patients with AVH.
The regression lines with ALT (solid line)
(r = 0.676, P <0.0001, y =
304x - 1280) and with AST (dotted line)
(r = 0.610, P <0.001, y =
237x - 1160) are indicated.
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Discussion
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We demonstrated that free ubiquitin RIA and multiubiquitin
chain ELISA are applicable to the estimation of each form of serum
ubiquitin. The presence of both ubiquitin forms in human serum is also
supported by the results of gel-filtration analysis (Fig. 2
). In the
ubiquitin-mediated proteolytic pathway, free ubiquitin and
multiubiquitin chains have distinct cellular roles: the former is a
pool for future conjugation to cellular proteins and the latter is an
active form that induces their degradation (3). Thus, the
measurements of both ubiquitin forms are informative for deducing the
cellular state of the ubiquitin system. We have stated previously that
our immunoassays may be the only authentic and practical methods of
quantifying both ubiquitin forms in the cells
(20)(21). Therefore, the present study is the
first attempt to infer the systemic (or organic) states of the
ubiquitin system from quantitation of both ubiquitin forms in human
serum.
The quality of the serum sample affected the ubiquitin quantitation
(Figs. 3
and 4
). Thus, we concluded that hemolytic serum must be
avoided and serum must be separated from the clots quickly (within
1 h from blood collection at room temperature) or under chilled
conditions (within 6 h from blood collection at 4 °C). Because
the free ubiquitin concentrations of slightly reddened serum were
within the range of control group 1, selection with the naked eye
appears sufficient to eliminate the effect of hemolysis. Overestimation
of serum ubiquitin by hemolysis is easy to understand because of the
presence of ubiquitin in the erythrocytes (Table 1
). However, it is
difficult to explain why the longer (>1 h) incubation of blood at room
temperature without hemolysis caused the increase of ubiquitin values.
We propose that it was caused by a unknown mechanism involving
ubiquitin release from erythrocytes. Clot formation seems to be
involved in this process because the 6-h incubation of blood
supplemented with anticoagulants (either EDTA or heparin) was less
effective for free ubiquitin increase (unpublished observation).
To evaluate ubiquitin concentrations in the patient sera, we used two
groups of sera from healthy volunteers, control groups 1 and 2 (Table 2
and Fig. 4
). The latter sera, separated after a long incubation (56
h) with clots, showed a greater increase of free ubiquitin than the
former because of the putative ubiquitin release from erythrocytes. On
the other hand, the former sera were prepared at 4 °C and thus were
expected to show accurate concentrations of ubiquitin with little
interference. Unfortunately, as described in Results, the
samples from patients were not prepared under such an ideal condition.
Therefore, comparison of serum ubiquitin concentrations was limited,
and only the four observations described in Results are
established. If the condition of serum separation is known for each
patient sample, then values might be normalized against a calibrated
curve as indicated in Fig. 3
. However, we could not determine the exact
condition of each sample, and thus such a method is not applicable to
this case.
Okada et al. (23) reported that plasma ubiquitin increased
in hemodialysis patients. We found that hemodialysis increased only
free ubiquitin but not multiubiquitin chains in the serum. Thus,
metabolism of each serum ubiquitin is distinct. Further studies are
required to clarify the relation between serum ubiquitin and diseases
tested in the present study.
Another aim of this study was to find potential clinical applications
of the ubiquitin measurements. Serum concentrations of multiubiquitin
chains but not free ubiquitin in AVH patients changed in accordance
with the clinical course (Fig. 6
) and correlated with the biochemical
determinants of liver injury (Table 3
). Ubiquitin conjugation to
cellular proteins is greatly enhanced by acute stress, e.g., heat shock
(5)(6) and ischemia
(15)(16). Therefore, multiubiquitin chains
may be inducible by acute hepatocellular damages in AVH, and they are
probably released into the blood by hepatonecrotic injury. On the basis
of this assumption, serum multiubiquitin chain concentration reflects
not only hepatocellular damage but also cytoprotective response to cell
injury. Some AVH sera showed high concentrations of multiubiquitin
chain in spite of low concentrations of ALT and AST (Fig. 7
), and might
reflect the cytoprotective response rather than damage. In addition, we
recently found that multiubiquitin chain concentrations in sera from
patients with drug-induced hepatitis were increased and highly
correlated with ALP and LAP activities but poorly correlated with AST
and ALT activities (unpublished observation). These results strongly
suggest that the serum multiubiquitin chain is a novel marker for
monitoring the clinical course of acute hepatic damage.
In the present study, AVH is proposed as a possible target for
clinical application of multiubiquitin chain ELISA. However, ubiquitin
is present in all cells in the human body; thus other diseases
accompanied by acute cellular damage, e.g., acute renal failure, might
also be candidates for the target. In addition, several studies have
revealed the great involvement of ubiquitin-dependent proteolysis in
cell proliferation via cell cycle control
(7)(8)(9). Consequently, malignant neoplasms seem
to be another candidate. Further studies are in progress in our
laboratory to assess serum ubiquitin in these diseases.
 |
Acknowledgments
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We are grateful to K. Shima (Department of Neurology, National
Sapporo Minami Hospital) for providing some patient sera and T. Inoue
(Department of Internal Medicine I, Jikei University School of
Medicine) for valuable discussion. We also thank Y. Negishi, T. Kubota,
K. Muramatsu, and the members of Hachioji Laboratory of SRL, Inc., for
their cooperation in blood sampling and T. Hirakawa for technical
assistance. This study was supported in part by a Grant in Aid for
Scientific Research on Priority Areas (Intracellular Proteolysis) from
the Ministry of Education, Science, and Culture. Some of the authors
have applied for a patent on the ELISA.
 |
Footnotes
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1 Nonstandard abbreviations: AVH, acute viral hepatitis; SLE, systemic lupus erythematosus; RA, rheumatoid arthritis; MND, motor neuron disease; MS, multiple sclerosis; MUCRP1, multiubiquitin chain reference preparation 1; AST, aspartate aminotransferase; ALT, alanine aminotransferase; LDH, lactate dehydrogenase; ALP, alkaline phosphatase; LAP, leucine aminopeptidase;
-GTP,
-glutamyltranspeptidase; CRP, C-reactive protein; DBi, direct bilirubin. 
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