(Clinical Chemistry. 1998;44:1388-1396.)
© 1998 American Association for Clinical Chemistry, Inc.
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Molecular Diagnostics and Genetics |
Detection of mutations in the apolipoprotein CII gene by denaturing gradient gel electrophoresis. Identification of the splice site variant apolipoprotein CII-Hamburg in a patient with severe hypertriglyceridemia
Markus S. Nauck1,a,
Henrik Nissen2,
Michael M. Hoffmann1,
Jürgen Herwig3,
Clive R. Pullinger4,
Maurizio Averna5,
Jürgen Geisel6,
Heinrich Wieland1,
and Winfried März1
1
Division of Clinical Chemistry, Department of Medicine, Albert Ludwigs-University, 79106 Freiburg, Germany.
2
Department of Clinical Chemistry, University Hospital,
5000 Odense, Denmark.
3
Department of Pediatrics, Johann Wolfgang
Goethe-University, 60590 Frankfurt, Germany.
4
Cardiovascular Research Institute, University of
California, San Francisco, CA 94143-0131.
5
Lipid Research and Atherosclerosis Center, Institute of
Internal Medicine and Geriatry, University of Palermo, 90127 Palermo,
Italy.
6
Klinisch-Chemisches Zentrallabor der
Universitätskliniken des Saarlandes, 66421 Homburg/Saar, Germany.
a Address correspondence to this author at: Department of Medicine, Division of Clinical Chemistry, Hugstetter Strasse 55, 79106 Freiburg i. Br., Germany. Fax 49-761-270 3444; e-mail msnauck{at}mzl200.ukl.uni-freiburg.de.
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Abstract
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Familial apolipoprotein (apo) CII deficiency is a rare autosomal
recessive inborn error of metabolism clinically resembling lipoprotein
lipase deficiency. A number of mutations of the apo CII
gene are known to date; they are located in the promoter region, the
coding exons, or in the splice junctions. We present a simple assay
based on PCR and denaturing gradient gel electrophoresis, which allows
scanning of the promoter, the entire coding sequence, and the splice
junctions of the apo CII gene for sequence variants. All
gene fragments are amplified using a common PCR protocol and are
examined for mutations on a single gradient gel. Using this method and
direct sequencing, we identified homozygosity for a donor splice-site
mutation in the second intron, previously designated apo CII-Hamburg,
as the genetic cause of apo CII deficiency in a 9-year-old boy
presenting with chylomicronemia, eruptive xanthoma, and pancreatitis.
In addition, the method allowed us to detect all of six different
other known mutations of the apo CII gene. We conclude,
therefore, that our assay is highly sensitive; in addition, it is easy
to perform and may facilitate the differential diagnosis of disorders
of lipoprotein metabolism at the genetic level.
 |
Introduction
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Apolipoprotein CII is a 79-amino acid apolipoprotein
(apo).1
It serves as a cofactor for lipoprotein lipase (LPL)
(1). LPL hydrolyzes triglycerides present in chylomicrons
and VLDLs to monoglycerides, diglycerides, and free fatty acids. Apo
CII is primarily synthesized in the liver (2) and is usually
present in human plasma at concentrations ranging from 22 to 55 mg/L
(3).
The importance of apo CII as a physiological activator of LPL has been
established in vitro (4) and by the identification of
patients with excessive hypertriglyceridemia due to a deficiency of apo
CII (5)(6). Affected patients present with
chylomicronemia, eruptive xanthomas, lipemia retinalis,
hepatosplenomegaly, and recurrent attacks of pancreatitis, which may
ultimately lead to chronic pancreatic insufficiency. Apo CII deficiency
is transmitted in an autosomal recessive fashion. The biochemical
findings in homozygous individuals include severe fasting
hypertriglyceridemia and chylomicronemia; heterozygous carriers are
typically normolipidemic (7). A transient normalization of
plasma triglyceride concentrations and a marked improvement in the
clinical course is achieved by infusion of apo CII in these patients
(8). Interestingly, however, transgenic mice overexpressing
the human apo CII gene are hypertriglyceridemic, suggesting
that apo CII has functions in the metabolism of plasma triglycerides
beyond activating LPL (9), for example, in the regulation of
the receptor-mediated catabolism of remnant lipoproteins. The human
apo CII gene is located on chromosome 19q13.2; it is ~3.4
kb in length and consists of three introns and four exons. The first
intron is located within the 5' untranslated region of the gene; the
second intron interrupts the codon for amino acid 11 of the signal
peptide, whereas the last intron interrupts the codon for amino acid 44
of the mature protein (10). Molecular defects leading to
deficiency of apo CII have been observed in a number of unrelated
kindred with familial hyperchylomicronemia
(8)(11)(12)(13)(14)(15)(16)(17)(18)(19)(20)(21). To date, only point mutations of
apo CII rather than major gene rearrangements have been
identified. These produce either amino acid exchanges, abnormal RNA
splicing, frameshifts, or premature termination codons. Recently, a
single nucleotide substitution in the promoter of the apo
CII gene has been identified, which diminishes binding of a
transcription factor to a positive cis-acting element. Ultimately, this
mutation results in complete deficiency of apo CII in the plasma
(22).
Apo CII deficiency can be diagnosed biochemically by measuring apo CII
(23), by isoelectric focusing (IEF) to detect charge
variants (24)(25), or by functional assays in
which the capacity of apo CII to restore LPL activity to normal is
determined (6). Each of these approaches has major
limitations. Reference values for plasma concentrations of apo CII
determined by immunoassay do not exclude the presence of dysfunctional
variants. Mutant apo CII lacking LPL cofactor activity may have an
unaffected isoelectric point, as shown for apo CII St.
Michael (12), and both IEF and functional assays are
cumbersome. In addition, heterozygous carriers of apo CII
mutations are hardly detectable by these methods. One strategy to
overcome these problems is to analyze the apo CII gene
directly.
In recent years, several reports have shown that electrophoresis in
thermally and chemically denaturing gradients is a powerful method to
screen for disease-related mutations and polymorphisms
(26)(27)(28)(29). In this study, we report the development of a
simple and highly sensitive denaturing gradient gel electrophoresis
(DGGE)-based assay to detect mutations in the promoter and coding
regions of the apo CII gene including the flanking splice
sites. Using this method, we identified a donor splice-site mutation in
the second intron of the apo CII gene in a 9-year-old boy
with severe chylomicronemia. The sensitivity of our assay was further
established by its ability to detect all of six other previously
characterized apo CII gene mutations.
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Materials and Methods
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human subjects
The male index patient (E.D.) suffered from recurrent vomiting
during the perinatal phase. As early as after 2 months of breast
feeding, he was switched to medium chain triglycerides.
Hypertriglyceridemia was diagnosed at early childhood, but the
underlying genetic abnormality was not identified. At that time, the
parents repeatedly received dietary advice. Nevertheless, the patient
continued to experience recurrent episodes of gastrointestinal
discomfort, vomiting, and diarrhea. In December 1991, when the patient
was 9 years old, he presented with eruptive xanthoma of the skin and
was referred to the Department of Pediatrics of the Frankfurt
University Hospital. Plasma triglycerides and cholesterol were 33.0
mmol/L and 6.63 mmol/L, respectively, and the biochemical diagnosis of
apo CII deficiency was established (see below). There was no evidence
of hepatospleno-megaly. There was no pathological finding on
neurological examination. Blood glucose, thyroid-stimulating hormone,
thyroid hormones, urea, and creatinine were all within the appropriate
reference intervals. The xanthomas gradually disappeared during the
weeks to follow, while the patient received a fat-restricted diet. At
the age of 11 years, the boy developed two bouts of acute pancreatitis,
which resolved within a few days of standard therapeutic regimen
including discontinuation of oral fat intake and hypocaloric parenteral
nutrition. Since then, additional severe gastrointestinal symptoms have
not occurred, and amylase and lipase activities remained within the
appropriate reference ranges despite marked fluctuations of the plasma
triglycerides.
The patient is the son of clinically healthy parents of Turkish descent
living in Germany. It is not clear whether there is consanguinity.
Their history was insignificant for hyperlipoproteinemia,
atherosclerotic vessel disease, or other metabolic disorders. The
sister of the patient was normolipidemic. There was no family history
of premature atherosclerosis. The brother of the mother, however, was
reported to have high plasma triglycerides as well, but he and other
family members were not available for genetic and biochemical
characterization.
lipids, lipoproteins, and apolipoproteins
Blood from fasting individuals was drawn into tubes
containing EDTA·K2 (final concentration, 1.52
g/L). Plasma was recovered by centrifugation. Cholesterol and
triglycerides were measured using enzymatic reagents (Boehringer
Mannheim and Wako). VLDL (density <1.0063 kg/L) were isolated by
preparative ultracentrifugation (30)(31).
HDL-cholesterol was determined by precipitating apo B-containing
lipoproteins in the density >1.0063 kg/L infranate (32).
The presence of chylomicrons was assessed by inspection of the serum.
Analysis of the apolipoproteins of triglyceride-rich lipoproteins by
IEF in immobilized pH gradients (Immobiline Dry Plates 47, Pharmacia)
and immunoblotting of apo CII was carried out as described
(24)(25). The dried gel was scanned
densitometrically using the OneDScan(TM) software from MWG-Biotech, and
the relative concentration of apo CII was expressed as a percentage of
the entire apo CII/CIII complex (apo CII/apo CII apo
CIII0 apo CIII1 apo CIII2).
dna isolation
Genomic DNA was isolated from peripheral leukocytes with a
commercial blood extraction kit (Diagen GmbH, Düsseldorf,
Germany). DNA was suspended in Tris-EDTA buffer (10 mmol/L Tris, pH
8.0, 1 mmol/L EDTA·K2) at concentrations between 50
and 200 mg/L and stored at -20 °C.
pcr primer design and melting map predictions
PCR primers corresponding to intronic sequences flanking the four
exons of the apo CII gene were designed on the basis of the
sequence published by Das et al. (33). Each PCR primer was
designed to include at least the first four intron bases flanking each
exon in the respective amplification product, thus allowing detection
of splice site mutations. The fragment of the short and untranslated
first exon was extended to cover also a substantial part of the 5'
regulatory region of the gene. To allow for amplification of all
fragments under identical conditions, primers with melting temperatures
(Tm) as similar as possible were chosen. To
achieve the highest possible sensitivity, we introduced a GC clamp into
one primer of each pair such that the amplicon enclosed a single domain
melting at low temperature. Melting maps of each genomic fragment with
a GC clamp attached to either the 5' or the 3' primer were generated
with the MELT 87 computer algorithm devised by Lerman and Silverstein
(34). MELT 87 calculates the Tm of a
given sequence as a function of its nucleotide sequence.
amplification of the promoter and the exons of apo cii
gene by pcr
All genomic regions examined were amplified using identical
reaction mixtures and thermal cycling conditions. Amplifications were
performed in volumes of 50 µL, containing 100 ng of genomic DNA, 0.8
µmol/L of each primer, 200 µmol/L of each deoxyribonucleotide, 10
mmol/L Tris-HCl, pH 8.3, 1.5 mmol/L MgCl2, 50 mmol/L
KCl, 0.1 g/L gelatin, 100 mL/L dimethyl sulfoxide, and 1 U
Thermus aquaticus DNA polymerase (Boehringer Mannheim). The
protocol included an initial denaturation step at 95 °C for 3 min,
followed by touch-down cycling in a programmable thermocycler (UNO II,
Biometra). The first 15 cycles consisted of a denaturation step of 1
min at 94 °C, an annealing step of 1 min at 57 °C, and an
elongation step of 1 min at 72 °C. In the next 15 cycles, the
annealing temperature was reduced to 55 °C for 1 min; the last 15
cycles were run with an annealing step of 53 °C for 1 min, followed
by a final elongation step of 72 °C for 10 min. Subsequently, a
denaturation/renaturation program was performed that included 99 °C
for 7 min, 65 °C for 60 min, 37 °C for 60 min, and final cooling
to 4 °C. The abundance and quality of the DNA fragments were
analyzed by electrophoresis on 20 g/L agarose gels, followed by
ethidium bromide staining and inspection under ultraviolet light.
dgge
To assess the sensitivity of the DGGE method, we examined DNA
harboring previously identified mutations in the apo CII
gene. DGGE was carried out according to Fischer and Lerman
(26), as modified by Nissen et al. (35).
GC-clamped amplified DNA fragments were run on 60 g/L polyacrylamide
gels (acrylamide:bisacrylamide, 19:1, by weight; gel size,16 x
20 x 0.1 cm) containing a linear gradient of 3070% denaturing
agent (100% corresponding to 7 mol/L urea and 400 mL/L deionized
formamide). Electrophoresis was performed at 150 V for 4 h at
60 °C in TAE buffer (40 mmol/L Tris-acetate, pH 7.5, 1 mmol/L
EDTA·Na2), using the thermostated DGENE(TM) electrophoresis
chamber from Bio-Rad. After electrophoresis, the gels were stained with
ethidium bromide and examined under ultraviolet illumination.
dna sequencing and restriction typing
A 857-bp fragment of the apo CII gene was amplified
using the primer pair 5'-AGT CAG CCT GCC ACA TGA CAC CCC-3' (forward
primer, located in the first intron) and 5'-GGG ACT CTC CCC TTG TCC ACT
GAT-3' (reverse primer, located in the fourth exon), the amplification
mixture described above, and the following cycler protocol: initial
denaturation step at 95 °C for 3 min, followed by 30 cycles of
denaturation (1 min at 95 °C), annealing (1 min at 65 °C), and
elongation (1 min at 72 °C). Amplification was completed by an
elongation reaction at 72 °C for 10 min. Direct sequencing of the
double-stranded PCR product was performed using the dideoxynucleotide
chain termination method and a fluorescently labeled forward primer.
Reaction products were developed on an A.L.F. DNA sequencer
(Pharmacia). To analyze the apo CII gene by restriction
enzyme typing, the 857-bp fragment of the apo CII gene was
digested with HphI and DdeI (37 °C for 3
h), analyzed on a 2% agarose gel, and visualized by ethidium bromide
staining.
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Results
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We studied lipids and lipoproteins in a boy with a longstanding
history of hypertriglyceridemia. He was hospitalized when he developed
eruptive xanthoma at the age of 9 years. Triglycerides and cholesterol
were 33.0 mmol/L and 6.63 mmol/L, respectively. LDL and HDL were
markedly reduced. Inspection of the fasting plasma kept in the
refrigerator overnight revealed ample amounts of chylomicrons and a
clear infranate. The patient was thus diagnosed as having type I
hypertriglyceridemia. A fat-free diet produced decreases of his
triglycerides and cholesterol to 4.75 and 2.95 mmol/L, respectively,
within 3 days of hospital admission. Lipid and lipoprotein
concentrations of the first degree relatives of the patient are shown
in Table 1
. We prepared triglyceride-rich lipoproteins by
ultracentrifugation at density <1.0063 kg/L and analyzed their
apolipoprotein composition by IEF in an immobilized pH gradient. Only
trace amounts of apo CII were detectable in two independent samples
from the index patient (Fig. 1
). The densitometric analysis of two independent samples from
the index patient revealed that apo CII contributed 1.1% and 2.5%,
respectively, to the total of apo CII and apo CIII. Compared with the
abundance of apo CIII, apo CII was reduced in the mother and in the
father of the index patient (16.0% and 16.2%, respectively). In
contrast, the relative concentration of apo CII was 23.7% in the
patient's sister.

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Figure 1. IEF and immunoblotting of urea-soluble apolipoproteins of
triglyceride-rich lipoproteins in a 9-year-old boy with chylomicronemia
and in his first degree relatives.
Triglyceride-rich lipoproteins were prepared by preparative
ultracentrifugation at a density of 1.0063 kg/L; delipidated;
solubilized in 20 mmol/L TRIS-HCl, pH 10.0, 6 mol/L urea, 10 g/L sodium
dodecyl sulfate, and 10 mmol/L dithiothreitol; and subjected to IEF in
an immobilized pH gradient (pH 47) (24)(25).
Gels were stained for protein, using Coomassie Brilliant Blue
(24) (left panel) or blotted to a
polyvinyldifluoride membrane (25) and probed with a
polyclonal antiserum specific for apo CII (23) (right
panel). After drying, the stained gel was scanned
densitometrically, and the relative concentration of apo CII was
expressed as a percentage of the entire apo CII/CIII complex (apo
CII/apo CII + apo CIII0 + apo CIII1 + apo
CIII2). The percentages of the scanned apo CII were 1.1%
and 2.5% for two independent samples from the index patient, 23.7%
for the patient's sister, and 16.2% and 16.0% for the mother and
father of the index patient, respectively.
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To identify the molecular defect underlying the apo CII deficiency in
our patient and to establish an effective procedure to rule out apo CII
deficiency in patients with excessive hypertriglyceridemia, we
developed a DGGE method to screen for sequence abnormalities of the
apo CII gene. Oligonucleotide primers were designed to
amplify the promoter region and exon 1, the translated exon sequences,
and the flanking intron sequences of the apo CII gene
(33). The fragment covering the 5' regulatory region of the
apo CII gene extended into the promoter up to position 235
upstream from the transcription initiation site. To increase the
sensitivity of our assay, an artificially high melting domain was
incorporated into the amplification products, using GC-clamped
oligonucleotide primers. For each fragment, melting maps containing GC
clamps of variable lengths at either the 5' or the 3' end were
evaluated (34). Ultimately, the lengths and sites of
attachment of the GC clamp producing the most uniform low-melting
domain were chosen. Sequences of the primers are listed in Table 2
. Melting profiles of the GC-clamped PCR products were
generated. As examples, the maps encompassing exon 3 and exon 4 are
shown in Fig. 2
. With the exception of the exon 4 fragment, all melting maps
indicated that the respective fragments contain a uniformly low-melting
domain, thus predicting high sensitivity to DNA sequence variations
(Fig. 2
). In the case of the fourth exon, the ideal profile was not
achieved because two domains largely differing by their
Tm were present (Fig. 2
). The domain with the
lower Tm, however, was very small. For this
reason, we assumed that it had no effect on the sensitivity to detect
sequence variations in the large domain melting at higher temperatures.

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Figure 2. Theoretical melting profiles for the GC-clamped PCR
products containing exons 3 and 4 of the apo CII gene,
respectively.
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When we examined the second exon of the apo CII gene, we
found a single band halted at an aberrant position and a four-band
pattern in our index patient and in his mother, suggesting homozygosity
and heterozygosity, respectively, for a sequence abnormality in this
part of the apo CII gene (Fig. 3
). To identify the underlying mutation, we directly sequenced
this DNA fragment. As shown in Fig. 4
A, the index patient was homozygous for a point mutation of the
donor splice site of the second intron of the apo CII gene
(1 G
C). This mutation, also known as apo CII-Hamburg, was
previously described in another Turkish family living in Germany
(14) and in one Japanese family (17). Using
digestion with HphI and DdeI of a 857-bp fragment
of the apo CII gene generated by PCR, we confirmed that our
index patient was homozygous for this mutation; both parents were
heterozygous carriers, whereas the sister was not affected (Fig. 4B
).
The (1 G
C) substitution of apo CII-Hamburg gives rise to
abnormally spliced apo CII messenger RNA, which contains a termination
codon next to the site of the mutation. Ultimately, a truncated form of
apo CII is produced, which is not secreted into the plasma. As
described by Fojo et al. (14), a small proportion of the apo
CII mRNA undergoes splicing, thus explaining the presence of trace
amounts of apo CII also found in the plasma of our homozygous patient.

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Figure 3. DGGE of apo CII gene fragments.
(A) Promoter and first exon. Lanes 1 and 4,
controls; lane 2, - 86 A G (homozygous); lane
3, - 86 A G (heterozygous). (B) Second exon and
flanking regions. Lanes 1 and 4, controls; lane
2, second intron + 1 G C (apo CII-Hamburg, homozygous);
lane 3, second intron + 1 G C (apo CII-Hamburg,
heterozygous). (C) Third exon and flanking regions.
Lanes 1 and 7, controls; lane 2,
Lys19 Thr (heterozygous); lanes 3 and 4,
Glu38 Lys (heterozygous); lane 5,
Tyr37 TER (homozygous); lane 6,
Tyr37 TER (heterozygous). (D) Fourth exon
and flanking regions. Lanes 1 and 4, controls; lane
2, Lys55 Gln (heterozygous); lane 3,
frameshift 70 + G (heterozygous).
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Figure 4. Identification of a G C nucleotide
substitution (apo CII-Hamburg) as the molecular defect in a patient
with chylomicronemia and apo CII deficiency.
(Top) Direct sequencing of an apo CII gene
fragment. The nucleotide sequence of the antisense strand is shown. The
sequence indicates homozygosity for a G-to-C transition, changing the
consensus donor splice site sequence of the second intron. This
produces an abnormally spliced apo CII messenger RNA containing a
termination codon next to the site of the nucleotide substitution.
(Bottom) Detection of the C-for-G substitution
characteristic of apo CII-Hamburg in the index patient and his first
degree relatives by restriction typing of in vitro amplified DNA with
HphI and DdeI. A 857-bp fragment of the apo
CII gene was amplified as described in Materials and
Methods and digested with HphI and DdeI.
HphI digestion of the "wild-type" allele produced four
fragments, 514, 202, 114, and 27 in length, respectively, whereas the
mutant allele gave rise to three fragments of 514, 316, and 27 bp,
respectively. DdeI digestion of the wild-type and mutant
allele produced eight (429,193, 92, 37, 37, 37, 18, and 14 bp) and nine
fragments (323, 193, 92, 106, 37, 37, 37, 18, and 14 bp), respectively.
The 551-bp bands in lanes 3 and 4 and the 74-bp bands in
lanes 9 and 10, respectively, are due to a 37-bp insertion
polymorphism within the third intron of the apo CII gene
described previously by Hegele et al. (55). Smaller
restriction fragments are not labeled.
|
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To further evaluate the sensitivity of our assay, we sought
documentation of its ability to detect other sequence variations. We
analyzed samples from previously identified homozygous or heterozygous
carriers of mutations in the apo CII gene (Table 3
). We obtained altered migration patterns when we examined the
regions in which the mutations were reported to occur. Samples
heterozygous for a particular mutation produced a characteristic
four-band pattern, the faster migrating pair of bands representing the
homoduplexes of the mutant and wild-type strands, respectively, and the
slower migrating pair of bands corresponding to heteroduplexes of the
two alleles. When we studied DNA containing the same mutation on both
alleles, we observed single homoduplex bands that were halted at
aberrant positions in the gel. In the cases of the homozygous mutation
in the promoter (-86 A
G, fragment 1, lane 2, Fig. 3
) and in the
third exon (Tyr
TER, lane 5, Fig. 3
), respectively,
we artificially generated heterozygous states by mixing the
amplification products of the mutant and the wild-type before heat
denaturation and renaturation. As expected, this produced four-band
patterns typical for heterozygosity (fragment 1, lane 3, and exon 3,
lane 6, Fig. 3
).
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Discussion
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Established biochemical methods for diagnosing a deficiency of apo
CII have been based on the immunochemical quantification of apo CII
(23), IEF (24)(25), or on functional
assays in which the capacity of apo CII to restore LPL activity to
normal is measured (6). The latter method is laborious and
not suited for screening purposes. Apo CII immunoassays and IEF may
fail to unravel a functional deficiency of apo CII (36), and
mutant apo CII may have an unaffected isoelectric point
(11). Examination of the apo CII gene, on the
other hand, permits definite determination of the defect in individuals
with suspected apo CII deficiency. There is no evidence of founder gene
effects in apo CII deficiency, and most defects in the apo
CII gene identified thus far were unique. Any newly identified
case or family is, therefore, expected to have another mutation.
Although substantial improvements of direct DNA sequencing methods have
been achieved, they are still expensive and labor-intensive, and
heterozygosity of mutations might produce equivocal results. We,
therefore, wished to develop a simple technique capable of detecting
point mutations anywhere in the apo CII gene.
A number of different mutation screening strategies are available
today, including chemical cleavage (37), RNase cleavage
(38), and heteroduplex analysis
(39)(40). These techniques have different levels
of sensitivity, simplicity of use, speed of mutation detection,
environmental safety, and cost-effectiveness
(41)(42). One of the most widely used techniques
is single-strand conformation polymorphism (SSCP) analysis; it is
rather sensitive and, most important, is easy to establish. To ensure
optimal sensitivity of SSCP methods, however, the PCR products from
each DNA region must be run under several different conditions. This
may include the use of nondenaturing polyacrylamide gels, both with and
without addition of glycerol, and running the gels at different power
and temperature (43). DGGE, which has been used in the
examination of many genes associated with dyslipidemia, for example, in
studies of the low-density lipoprotein receptor
(35)(44)(45), the codon 3500 region
of apo B (46), apo E (47)(48), and
lipoprotein lipase (49) compares favorably to the SSCP
technique. Most important, DGGE is generally accepted as being more
sensitive than SSCP (50)(51). No previously
undetected mutations were found when samples in which no mutation was
detected by DGGE were completely sequenced, thus giving this technique
~100% sensitivity (52)(53). Another advantage
of DGGE is that identical electrophoresis conditions can be used for a
number of DNA regions (35)(54). Thus, once the
DGGE conditions are established for a particular sequence of interest,
DGGE may be markedly simpler than SSCP.
Pivotal for the convenience and sensitivity of DGGE is the design of
the primers, which should afford common cycling and electrophoresis
conditions for all fragments and the highest sensitivity. Both demands
have been accomplished in the method presented here. All fragments are
amplified using the same reaction and cycling conditions, and all
fragments are scanned for mutations on a single denaturing gradient
gel. Together, these features allow us to study individual patients one
at a time rather than to collect larger series of patients and analyze
them exon by exon.
Our assay scans not only the entire coding sequence and splice
junctions of the apo CII gene, but also a major part of the
promoter region of the apo CII gene, encompassing those
sites of sequence variations of the 5' regulatory region known to date
(21)(22). Because there are no known frequent
polymorphisms in the apo CII gene that are covered by the
amplified fragments, each deviation from the usual electrophoretic
pattern is likely to represent a mutation. Thus, after the suspected
mutation-carrying exon has been identified, sequencing can be confined
to this particular exon. Once a specific mutation is detected in a
family with apo CII deficiency, the DGGE method can also be used to
trace the mutation in the respective family.
Clinically and biochemically, apo CII deficiency closely simulates LPL
deficiency (hyperlipoproteinemia type Ia). It is, therefore, referred
to as hyperlipoproteinemia type Ib. Although mutations in the
LPL gene more frequently appear to be the cause of type I
hyperlipoproteinemia, our DGGE assay will be a valuable complement to
the differential diagnosis of type I hyperlipoproteinemia. It will not
only provide a tool for the definite genetic diagnosis of apo CII
deficiency but also open the opportunity to identify new mutations
having only mild impacts on the clinical and/or biochemical phenotype.
This, in turn, will extend the understanding of the relationship
between genotype and phenotype of apo CII
mutations.
Identification of variants exhibiting unaffected LPL cofactor activity
in patients with hyperlipoproteinemia may help to unravel thus far
unknown functions of apo CII. Evidence for one such function comes from
the finding that transgenic mice overexpressing human apo CII exhibit
hypertriglyceridemia (9). In these mice, the clearance of
VLDL was delayed, whereas the production of VLDL was unaffected. VLDL
prepared from the transgenic animals showed markedly decreased binding
to heparin, raising the possibility that apo CII modulates the
interaction of lipoproteins with cell surface glycosaminoglycans.
In conclusion, we have shown here that DGGE is a reliable and rapid
screening method for the detection of sequence variations in the
apo CII gene. Considering its high capacity and sensitivity,
this method affords rapid diagnosis of apo CII deficiency and will
contribute to the elucidation of the possible role of apo CII variants
in mild hypertriglyceridemia.
 |
Acknowledgments
|
|---|
We thank L. S. Lerman for providing the MELT 87 program. We
gratefully acknowledge the excellent technical assistance of Sabine von
Karger and Ulrike Stein.
 |
Footnotes
|
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1 Nonstandard abbreviations: apo, apolipoprotein; IEF, isoelectric focusing; LPL, lipoprotein lipase; DGGE, denaturing gradient gel electrophoresis; Tm, melting temperature; and SSCP, single-strand conformation polymorphism. 
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