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Departments of
1
Chemical Pathology and
2
Obstetrics and Gynecology, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, New Territories, Hong Kong SAR.
3
Nuffield Department of Obstetrics and Gynecology,
University of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United
Kingdom.
a Author for correspondence. Fax 852 2194 6171; e-mail loym{at}cuhk.edu.hk.
| Abstract |
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| Introduction |
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We have recently described a real-time quantitative PCR assay for measuring the concentration of circulating fetal DNA in maternal plasma and serum (8). This assay exploits the 5' to 3' exonuclease activity of the Taq DNA polymerase, which leads to the liberation of a fluorescent reporter during DNA amplification (9)(10)(11). The monitoring of the increase in the fluorescence signal during PCR allows accurate quantification of the template copy number before amplification. Our results showed that fetal DNA constitutes 3.4% and 6.2% of the total plasma DNA in maternal blood in early and late pregnancy, respectively (8).
In this study, we investigated the concentration of circulating fetal DNA in preeclamptic pregnancies in an effort to understand the pathologic processes that may influence the concentration of fetal DNA in maternal plasma. We decided to study preeclampsia because previous authors reported increased transfer of fetal-derived cells, such as trophoblasts (12) and fetal erythroblasts (13), into the maternal circulation. Our present study should reveal whether, in addition to disturbed cellular transfer, nucleic acid traffic would also be affected in preeclampsia.
| Materials and Methods |
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processing of blood samples
Blood samples were centrifuged at 3000g, and serum
samples were carefully removed from blood collection tubes and
transferred into plain polypropylene tubes. Great care was taken to
ensure that the blood clot was undisturbed when serum samples were
removed. The samples were stored at -70 or -20 °C until further
processing.
dna extraction from serum samples
DNA from serum samples was extracted using a QIAamp Blood Kit
(Qiagen) using the "blood and body fluid protocol" as recommended
by the manufacturer (14). A 400800 µL serum sample was
used for DNA extraction per column. The exact amount used was
documented to enable the calculation of the target DNA concentration
(8).
real-time quantitative pcr
The theoretical and practical aspects of real-time quantitative
PCR have been described in detail elsewhere (8)(10)(11).
Real-time quantitative PCR analysis was performed using a Perkin-Elmer
Applied Biosystems 7700 Sequence Detector. The amplification and
product reporting system used is based on the 5' nuclease assay
(9) (marketed by Perkin-Elmer as the TaqMan assay) in which
the liberation of a fluorescent reporter is coupled to the
amplification reaction. Amplification primers and fluorescent probes,
designed to detect the SRY gene on the Y chromosome and the
ß-globin gene on chromosome 11, were as described
previously (8).
TaqMan amplification reactions were set up as described previously (8), using 5 µL of the extracted serum DNA. Thermal cycling conditions and the use of uracil N-glycosylase were as described previously (8). Each sample was analyzed in duplicate. A calibration curve was run in parallel and in duplicate with each analysis.
Amplification data collected by the 7700 Sequence Detector and stored in the Macintosh computer were then analyzed using the Sequence Detection System software developed by Perkin-Elmer Applied Biosystems. The detection threshold was set at 10 SD above the mean baseline fluorescence, calculated from cycles 115 (10). An amplification reaction in which the fluorescence intensity increased above the threshold during the course of thermal cycling was defined as a positive reaction. The cycle number at which the fluorescence increased above the threshold was designated as the threshold cycle (CT). The CT value was used to quantify the starting template number as described previously (8). The quantification results were expressed as genome-equivalents/mL. One genome-equivalent was defined as the quantity of a particular DNA sequence present in one diploid male cell.
anticontamination measures
Strict precautions against PCR contamination were used
(15). In addition, the TaqMan assay also included an
additional anticontamination measure in the form of preamplification
treatment using uracil N-glycosylase, which destroyed
uracil-containing PCR products (16). Multiple negative water
blanks were included in every analysis.
| Results |
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The analytical intraassay CV of CT values obtained using the real-time TaqMan SRY assay was 1.5% (mean ± SD, 33.6 ± 0.5), as determined by 20 replicate quantitative PCR assays of DNA extracted from the serum of a woman carrying a male fetus in the third trimester of pregnancy. The total CV of CT values obtained using the system starting from DNA extraction followed by quantitative PCR was determined to be 2.7% (mean ± SD, 33.4 ± 0.9) by 20 replicate extractions of serum samples from the same pregnant subject. The CV of the DNA extraction system was calculated to be 2.2%. For the analysis of the clinical samples, preeclamptic and matched non-preeclamptic samples were always extracted and analyzed in the same assay.
Fig. 1C
shows the amplification plots from serum DNA from a number of
preeclamptic and control pregnant women. The amplification plots from
preeclamptic women were located to the left of control subjects (Fig. 1C
), indicating that higher concentrations of circulating fetal DNA
were present in these two preeclamptic compared with the two control
individuals.
Comparison of these amplification plots with a calibration curve of
serially diluted male DNA allowed the conversion of
CT values into fetal DNA concentrations in
genome-equivalents/mL. Fig. 2
shows the ranges of fetal DNA concentrations observed in 20
preeclamptic and 20 control subjects. The median fetal DNA
concentrations in preeclamptic and control pregnancies were 381
genome-equivalents/mL (interquartile range, 194788
genome-equivalents/mL) and 76 genome-equivalents/mL (interquartile
range, 54163 genome-equivalents/mL), respectively. Fetal DNA
concentrations were higher in preeclamptic than control pregnancies
(MannWhitney rank-sum test, P <0.001). Removal of the
apparent outlier in the preeclamptic group showing the highest
circulating fetal DNA concentration (2375 genome-equivalents/mL) (Fig. 2
) did not significantly affect the median fetal DNA concentration in
the preeclamptic group (325 genome-equivalents/mL) nor the significant
difference between the preeclamptic and control group (MannWhitney
rank-sum test, P <0.001). None of the serum samples from
the 10 women carrying female fetuses had any SRY signal.
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As a control for the ability of serum-extracted DNA to be amplified, all samples were subjected to a TaqMan assay for the ß-globin gene. Positive amplification signals were seen in all tested samples, thus confirming the quality of the DNA samples.
| Discussion |
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The mechanisms leading to the increase in maternal serum fetal DNA are unclear at present. Possible pathways include increased liberation of fetal DNA into the maternal circulation and/or reduced clearance of circulating DNA from maternal blood. Because plasma DNA has been postulated to be a marker of cell death (17)(18), increased amounts of fetal DNA may be liberated from necrotic (19) or apoptotic (20) areas in the placenta. On the clearance side, the kidneys and liver have been suggested to be the main organs for the removal of circulating DNA (21)(22). Because pathologic changes involving the kidneys and liver are well-described in preeclampsia (23), it is likely that these processes might reduce the ability of these organs to remove DNA from the circulation.
The relationship between the entry of fetal nucleated cells into the maternal circulation (24) and cell-free fetal DNA remains to be elucidated. This potential relationship is worth investigating, especially in view of the fact that increased entry of fetal nucleated cells, such as trophoblasts (12) and erythroblasts (13), have been described in preeclampsia. Using an immunocytochemical approach, Chua et al. (12) were able to detect large numbers of trophoblasts in the uterine venous blood of preeclamptic women. However, when they applied the same technique to the analysis of peripheral venous samples from these preeclamptic subjects, they were able to detect trophoblasts in only a minority of cases. These data suggest that a large proportion of trophoblasts was either trapped or destroyed during their passage through the maternal circulation. These observations therefore raise the possibility that fetal DNA is liberated through destruction of circulating fetal nucleated cells, of which the trophoblasts constitute a subset. Circulating fetal DNA in maternal peripheral blood may therefore be a valuable and easily accessible marker of trophoblast trafficking, a process that up to now has been difficult to study in a noninvasive manner. Compared with the analysis of fetal nucleated cells that have entered into the maternal blood, which in many cases requires the use of fetal cell enrichment procedures (25)(26), plasma DNA analysis has the advantage of being rapid, reliable, and easily carried out for a large number of samples.
Apart from its biologic implications, the measurement of the fetal DNA concentration in maternal serum may have diagnostic importance in preeclamptic pregnancies. Compared with other markers for preeclampsia, fetal DNA measurement is unique in that it is a genetic marker, whereas other markers, such as activin A and inhibin A (27), are generally hormonal or metabolic markers. By its nature, a genetic marker has the characteristic of being completely fetal-derived. The measurement of fetal DNA concentrations in pregnancies involving a female fetus would require the development of fetal-specific markers outside the Y chromosome. Autosomal genetic markers suitable for this type of analysis have already been described (24).
The potential clinical implication of maternal serum fetal DNA measurement, especially with regard to the prognosis and guidance of clinical management requires future prospective studies. Additional research will also be required to investigate whether abnormal patterns of fetal DNA liberation or clearance may be detectable even before the development of the clinical signs of preeclampsia.
Our data show that real-time quantitative PCR is an accurate and efficient method for the detection and quantification of circulating DNA. With conventional PCR techniques, accurate quantification is difficult once the reaction has reached the plateau phase. One advantage of real-time quantitative PCR is that quantitative information is obtained at the threshold cycle, well before the plateau phase has been reached. The 96-well format allows a large number of samples to be analyzed in 2 h. The homogeneous nature of the assay avoids downstream processing and reduces the chance of carryover contamination. All of these features are advantageous for the potential clinical application of this type of system. Apart from the analysis of fetal DNA in maternal plasma and serum, we also envisage that this type of assay may have applications in other clinical scenarios where non-host DNA is found, such as tumor-derived DNA in oncology patients (5)(28) and donor-derived DNA in transplant recipients (6).
| Acknowledgments |
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| References |
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T. N. Leung, J. Zhang, T. K. Lau, L. Y.S. Chan, and Y.M. D. Lo Increased Maternal Plasma Fetal DNA Concentrations in Women Who Eventually Develop Preeclampsia. Clin. Chem., January 1, 2001; 47(1): 137 - 139. [Full Text] [PDF] |
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Y.M. D. Lo Fetal DNA in Maternal Plasma: Biology and Diagnostic Applications Clin. Chem., December 1, 2000; 46(12): 1903 - 1906. [Abstract] [Full Text] [PDF] |
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Y.M. D. Lo, T. K. Lau, L. Y.S. Chan, T. N. Leung, and A. M.Z. Chang Quantitative Analysis of the Bidirectional Fetomaternal Transfer of Nucleated Cells and Plasma DNA Clin. Chem., September 1, 2000; 46(9): 1301 - 1309. [Abstract] [Full Text] [PDF] |
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R. Al-Mufti, H. Hambley, G. Albaiges, C. Lees, and K. H. Nicolaides Increased fetal erythroblasts in women who subsequently develop pre-eclampsia Hum. Reprod., July 1, 2000; 15(7): 1624 - 1628. [Abstract] [Full Text] [PDF] |
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N. L.S. Tang, T. N. Leung, J. Zhang, T. K. Lau, and Y.M. D. Lo Detection of Fetal-derived Paternally Inherited X-Chromosome Polymorphisms in Maternal Plasma Clin. Chem., November 1, 1999; 45(11): 2033 - 2035. [Full Text] [PDF] |
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Y.M. D. Lo, T. K. Lau, J. Zhang, T. N. Leung, A. M.Z. Chang, N. M. Hjelm, R. S. Elmes, and D. W. Bianchi Increased Fetal DNA Concentrations in the Plasma of Pregnant Women Carrying Fetuses with Trisomy 21 Clin. Chem., October 1, 1999; 45(10): 1747 - 1751. [Abstract] [Full Text] [PDF] |
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W. Holzgreve and S. Hahn Novel Molecular Biological Approaches for the Diagnosis of Preeclampsia Clin. Chem., April 1, 1999; 45(4): 451 - 452. [Full Text] [PDF] |
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