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1
Department of Psychiatry, 11/F Room 134046, Prince of Wales Hospital, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
2
Department of Biochemistry, Room 608, 6/F Mong Man Wai
Building, The Chinese University of Hong Kong, Shatin, New Territories,
Hong Kong.
a Author for correspondence. Fax 852-2646-2284; e-mail b025744{at}mailserv.cuhk.edu.hk
| Abstract |
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T mutation in exon 1. Methods: One hundred nineteen Hong Kong Chinese subjects were genotyped by means of allele-specific PCR, PCR, and restriction enzyme analysis for 10 CYP2D6 alleles (CYP2D6*1, *2, *4D, *5, *8/*14, *10A, *10B, *15, *16, and J9).
Results: CYP2D6*10B was the most prevalent allele, and CYP2D6*10/CYP2D6*10 was the most frequent genotype, representing 46.22% of the population.
Conclusions: There was no significant difference in the prevalence of the alleles analyzed between our study and the Chinese populations genotyped previously. This is the largest study in terms of the number of CYP2D6 alleles analyzed in an Oriental population and the first one conducted in a Hong Kong Chinese population.
| Introduction |
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In addition to interindividual variability in CYP2D6 enzyme activity,
the incidence of PMs of debrisoquine has been shown to vary between
different populations. The prevalence of PMs ranges from <1% in some
Oriental populations to as high as 19% in some black populations
(2). In particular, differences between Caucasian and
Oriental populations have been studied exhaustively (3)(4)(5)(6)(7)(8).
Interracial differences are explained by an unequal distribution of the
alleles of the CYP2D6 gene among different populations. The
defective alleles CYP2D63 and CYP2D64 that give
rise to the PM phenotype in Caucasians are rarely found in Chinese,
explaining the low frequency of PMs in this population. However, these
two races differ not only in the incidence of PMs but also in the
activity of debrisoquine hydroxylase within the extensive metabolizer
(EM) phenotype. The distribution of the debrisoquine metabolic ratios
is shifted toward higher values among Chinese EMs, indicating lower
CYP2D6 enzyme activity. These individuals are classified as
intermediate metabolizers. The lower enzyme activity in Oriental EMs is
associated with the frequent presence of the allele CYP2D10
and its variants, CYP2D10A and CYP2D10B. These
alleles contain a C188
T mutation that causes a
Pro34
Ser amino acid substitution, leading to
the formation of an unstable enzyme with lower metabolic activity
(3).
Earlier studies have indicated that there may be differences in CYP2D6
enzyme activity not only between the major races but also among
different Oriental populations (4)(5)(6)(7)(8). Consequently, further
studies on different Oriental ethnic groups were urgently needed to
provide important genotypic data for facilitating rational
therapeutics. In this study, we analyzed the molecular basis of the
CYP2D6 polymorphism in a Hong Kong Chinese population,
aiming at characterizing the distribution of known alleles of the
CYP2D6 locus. The genotyping analysis presented here
comprises the identification of 10 CYP2D6 alleles (including
the wild type) by PCR-based methods (Table 1
). CYP2D6
alleles are designated according to the current nomenclature
(9).
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| Materials and Methods |
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statistics
The frequency of a determined CYP2D6X allele in a
sample of N individuals was estimated by (2nx/x +
nx/-)/2N, where nx/x is
the number of individuals homozygous for X, and
nx/- is the number of individuals heterozygous
for the X allele. Allele frequencies in different populations were
compared using Z-test for proportions.
genotype determination
Blood samples (12 mL) were collected in
Vacutte® (Greiner) tubes containing EDTA as an
anticoagulant. DNA was extracted using a QIAamp blood kit (Qiagen). PCR
followed by either restriction-enzyme digestion of the amplified
product or allele-specific PCR (ASPCR) tests was used to identify some
of the CYP2D6 alleles. The mutations analyzed for each of
the alleles and primers and/or enzymes used for the corresponding tests
are summarized in Table 1
. Sequences and locations of the primers for each PCR/ASPCR
reaction are specified in Table 2
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The first step was the amplification of a 5093-bp genomic DNA fragment,
containing all nine CYP2D6 exons, to be used as an
amplicon for the subsequent PCR-based tests. Genomic DNA (400 ng) was
used as template and the Expand Long Template PCR
SystemTM (Boehringer) was applied. The reaction
was carried out in a 25-µL mixture containing buffer 3 (supplied with
the kit), 2.5 mmol/L MgCl2, 500 µmol/L
deoxynucleotide triphosphates, 0.5 µmol/L of each of the
CYP2D6-specific primers (2D6F and 2D6R; see Table 2
) and 2 U
of the enzyme mixture (Taq and Pwo polymerases).
The cycle profile was as follows: predenaturation at 94 °C for 2
min, followed by 10 cycles of denaturation at 94 °C for 1 min,
annealing at 60 °C for 30 s, and synthesis at 68 °C for 4
min. These 10 cycles were followed by 30 additional cycles in which the
elongation time was increased by 20 s in each cycle. The final
elongation step was 7 min at 68 °C. Approximately 10 ng of the
5093-bp PCR product was used as a template in the subsequent nested PCR
reactions. Detection of the mutations was performed as per the
corresponding references listed in Table 1
. Only the modifications
and/or new assays are described in this report. All PCR reactions were
carried out in a PTC-200 DNA Engine thermocycler (MJ Research) or in a
Mastercycler Gradient thermocycler (Eppendorf). PCR products were
detected in ethidium bromide-agarose gels.
frequency of the c188
t mutation
Additional precautions to increase specificity were taken when
checking for mutations in exon 1 and 2, especially for the mutation
C188
T, which is responsible for decreased
CYP2D6 enzyme activity in Orientals
(3)(6). To exclude any possible artifact
attributable to the coamplification of CYP2D7P, primer M,
whose sequence is unique to CYP2D6, was used in combination
with primer A to amplify exons 1 and 2 of the active gene. PCR was
carried out using the same cycling conditions as those to amplify the
whole gene. The concentrations of MgCl2 and the
primers were 2.5 mmol/L and 0.4 µmol/L, respectively. The 1193-bp PCR
product (amplicon AM) was used as a template for the subsequent rounds
of PCR reactions to allow detection of mutations in introns 1 and 2.
For C188
T, primers A and B were used. A
parallel PCR reaction using primers A and 10B was carried out to detect
the CYP2D7P-derived sequence in the region 302333,
characteristic of CYP2D62, and to rule out any
possible misinterpretation of C188
T
(3). The final concentrations of the PCR reagents for a
25-µL reaction were as follows: 0.8 mmol/L
MgCl2, 40 µmol/L dNTPs, 0.250 µmol/L of each
primer, and 0.5 U of the Taq polymerase enzyme (Boehringer
Mannheim). The cycle profile was as follows: predenaturation at
94 °C for 2 min, followed by 25 cycles of denaturation at 94 °C
for 1 min, annealing at 66 °C for 30 s, and synthesis at
72 °C for 1.5 min. The final elongation step was 7 min at 72 °C.
The PCR products obtained, which were 270 bp when A and B were used for
amplification and 230 bp when A and 10B were used, were digested by
HphI as described previously (6).
frequency of the t226 insertion mutation
In CYP2D8P and
CYP2D7P pseudogenes, a T exists at the 226
site corresponding to exon 1 of the wild-type CYP2D6 gene
(11)(12). Hence, to exclude artifacts caused by
coamplification of pseudogenes, amplicon AM was used as a template for
subsequent reactions. PCR products generated by the primer pairs A and
B (270 bp) and A and 10B (230 bp) were digested by BspMI
(11).
frequency of the c1127
t mutation
The mutation C1127
T was
checked by amplifying 10 ng of amplicon AM with allele-specific primers
1127W and 1127A, and the reverse primer M. The final concentrations of
the PCR reagents were as follows: 0.8 mmol/L
MgCl2, 40 µmol/L dNTPs, 0.200 µmol/L of each
primer, and 0.25 U of Taq polymerase (Boehringer Mannheim).
Cycling conditions were as follows: predenaturation at 97 °C for 2
min, followed by 25 cycles of denaturation at 94 °C for 1 min,
annealing at 62 °C for 30 s, and synthesis at 72 °C for 1
min. The final elongation step was 7 min at 72 °C.
frequency of the g1749
c mutation
ASPCR by competitive oligonucleotide priming (13) was
used for the detection of this mutation. The previously amplified
CYP2D6 gene was used as a template in a PCR reaction buffer
similar to that described above for C188
T.
Primers E, F, and 1749W or 1749A (for the parallel reaction) were used.
Cycling conditions were as follows: predenaturation at 97 °C for 2
min, followed by 20 cycles of denaturation at 94 °C for 1 min,
annealing at 66 °C for 30 s, and synthesis at 72 °C for 1
min. The final elongation step was 7 min at 72 °C.
frequency of the cyp2d65 allele
The deletion allele CYP2D65 was identified using
primers Z and Y, which are located in CYP2D7 and in the
3'-flanking region of CYP2D6, respectively (Table 2
). We
applied the method described by Griese et al. (14) with some
modifications. PCR was performed on a PTC-200 DNA Engine thermocycler
using the Expand Long Template PCR System. The reaction was carried out
in a 25-µL mixture containing buffer 3 (supplied with the kit),
MgCl2 at 2.25 mmol/L, deoxynucleotide
triphosphates at 500 µmol/L each, each of the primers at 0.3
µmol/L, and 500 ng of genomic DNA as template. The cycle profile was
as follows: predenaturation at 93 °C for 1 min, followed by 39
cycles of denaturation at 93 °C for 1 min, annealing at 63 °C for
30 s, and synthesis at 68 °C for 6 min. The final elongation
step was 7 min at 72 °C. Carriers of allele 5 revealed a
6.2-kb PCR fragment amplification. This assay was validated using as a
positive control a DNA sample from an individual showing (by Southern
blot) a XbaI 11.5-kb restriction fragment indicative of
CYP2D5 (gift from Dr. J. M. Agúndez, Department
of Pharmacology, Medical School, University of Extremadura, Badajoz,
Spain). Detection of the CYP2D65 allele was submitted to
different PCR tests to confirm the results. To this end, primer Y was
used in combination with primer CYP13 under the same PCR conditions.
This assay yielded a 3.5-kb fragment (15).
| Results and Discussion |
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T mutation, a
variant described previously (16), and two other individuals
presented 2 alleles without mutation
C2938
T. On the other hand, two individuals
homozygous for the CYP2D610 alleles were found to have
mutation C2938
T, which is characteristic of
allele 2. The presence of this particular mutation, which
causes an Arg296
Cys amino acid substitution,
can be considered of high functional importance as exemplified by its
significant role in the CYP2D617 allele (17).
Further studies on alterations of the enzymatic activity caused by the
combinations of these mutations are on going. The frequency of allele
2 was somewhat lower than that found in previous studies
conducted in Chinese populations (Table 4
T, which is
characteristic of the 10 alleles, was 64.71%. As shown in
Table 4
T was higher
than that found in Chinese living in Sweden (51%)
(3)(7) and similar to that found in Taiwanese
Chinese (70%) and Chinese living in Singapore (62%)
(6)(18). These differences in the frequency of
C188
T were not statistically significant and
could be attributed to the different methods applied for its detection
(3).
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Alleles CYP2D615 (11), CYP2D616 (12), and CYP2D68/14 (19)(20) seem to be very rare mutant alleles in Caucasians as well as in Orientals. To date, no studies on their prevalence have been done in Oriental populations, and our results show that alleles 15 and 16 are rare in these population. Recently, three 14 alleles were characterized in a sample of 124 (1.2%) Taiwanese Chinese subjects by Wang et al. (20).
As expected, CYP2D64D, which is the main allele responsible for the PM phenotype in Caucasians (21), was not detected in our study.
CYP2DJ9 was first detected in Japanese (22)(23) with a very low frequency (0.7%). Because of the similarity between the Japanese and Chinese populations, we thought it would be of interest to find the distribution of CYP2DJ9 in Chinese because it has not been studied previously. However, this allele was not found in the Hong Kong population studied.
cyp2d6 genotypes
We found eight different genotypes, which are listed together with
their respective frequencies in Table 5
. As expected, the most frequent genotype was
10/10, followed by
1/10. Individuals homozygous for allele
10 have impaired metabolism of debrisoquine-4-hydroxylase,
which explains the right shift in the metabolic ratio of debrisoquine
among Chinese when compared with Caucasian EMs.
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No significant differences in allele distribution or genotype were observed between psychiatric patients and healthy individuals. However, it is worth mentioning that psychiatric patients showed a higher frequency overall of allele 2 when compared with the controls (data not shown). This observation requires further study because discrepancies in the of catalytic activity of allele 2 have been reported (24). In addition, allele 2 is the main CYP2D6 variant behind the genetic mechanism that originates duplications of the active CYP2D6 gene that gives rise to the ultrarapid metabolizer phenotype (25)(26). Thus, there may be clinical relevance for the drug treatment of psychiatric patients harboring this allele.
In Orientals, PCR-based detection of the 10/10 genotype should be recommended when CYP2D6-metabolized drugs are applied.
| Footnotes |
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| References |
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