Clinical Chemistry 46: 1221-1229, 2000;
(Clinical Chemistry. 2000;46:1221-1229.)
© 2000 American Association for Clinical Chemistry, Inc.
Flow Cytometry: Principles and Clinical Applications in Hematology
Michael Brown1 and
Carl Wittwera,1
1
Department of Pathology, University of Utah, ARUP Laboratories, Inc., Salt Lake City, UT 84132.
a Address correspondence to this author at: Department of Pathology, University of Utah, 50 North Medical Dr., Salt Lake City, UT 84132. E-mail carl_wittwer{at}hlthsci.med.utah.edu
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Abstract
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The use of flow cytometry in the clinical laboratory has grown
substantially in the past decade. This is attributable in part to the
development of smaller, user-friendly, less-expensive instruments and a
continuous increase in the number of clinical applications. Flow
cytometry measures multiple characteristics of individual
particles flowing in single file in a stream of fluid. Light scattering
at different angles can distinguish differences in size and internal
complexity, whereas light emitted from fluorescently labeled antibodies
can identify a wide array of cell surface and cytoplasmic antigens.
This approach makes flow cytometry a powerful tool for detailed
analysis of complex populations in a short period of time. This report
reviews the general principles in flow cytometry and selected
applications of flow cytometry in the clinical hematology
laboratory.
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Introduction
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Flow cytometry provides rapid analysis of multiple
characteristics of single cells. The information obtained is
both qualitative and quantitative. Whereas in the past flow cytometers
were found only in larger academic centers, advances in technology now
make it possible for community hospitals to use this methodology.
Contemporary flow cytometers are much smaller, less expensive, more
user-friendly, and well suited for high-volume operation. Flow
cytometry is used for immunophenotyping of a variety of specimens,
including whole blood, bone marrow, serous cavity fluids, cerebrospinal
fluid, urine, and solid tissues. Characteristics that can be measured
include cell size, cytoplasmic complexity, DNA or RNA content, and a
wide range of membrane-bound and intracellular proteins. This review
will describe the basic principles of flow cytometry and provide an
overview of some applications to hematology.
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General Principles
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Flow cytometry measures optical and fluorescence characteristics
of single cells (or any other particle, including nuclei,
microorganisms, chromosome preparations, and latex beads). Physical
properties, such as size (represented by forward angle light scatter)
and internal complexity (represented by right-angle scatter) can
resolve certain cell populations. Fluorescent dyes may bind or
intercalate with different cellular components such as DNA or RNA.
Additionally, antibodies conjugated to fluorescent dyes can bind
specific proteins on cell membranes or inside cells. When labeled cells
are passed by a light source, the fluorescent molecules are excited to
a higher energy state. Upon returning to their resting states, the
fluorochromes emit light energy at higher wavelengths. The use of
multiple fluorochromes, each with similar excitation wavelengths and
different emission wavelengths (or "colors"), allows several cell
properties to be measured simultaneously. Commonly used dyes include
propidium iodide, phycoerythrin, and fluorescein, although many other
dyes are available. Tandem dyes with internal fluorescence resonance
energy transfer can create even longer wavelengths and more colors.
Table 1
lists clinical applications and cellular characteristics that are
commonly measured. Several excellent texts and reviews are available
(1)(2)(3)(4)(5)(6).
Inside a flow cytometer, cells in suspension are drawn into a
stream created by a surrounding sheath of isotonic fluid that creates
laminar flow, allowing the cells to pass individually through an
interrogation point. At the interrogation point, a beam of
monochromatic light, usually from a laser, intersects the cells.
Emitted light is given off in all directions and is collected via
optics that direct the light to a series of filters and dichroic
mirrors that isolate particular wavelength bands. The light signals are
detected by photomultiplier tubes and digitized for computer analysis.
Fig. 1
is a schematic diagram of the fluidic and optical components of a flow
cytometer. The resulting information usually is displayed in histogram
or two-dimensional dot-plot formats.

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Figure 1. Schematic of a flow cytometer.
A single cell suspension is hydrodynamically focused with sheath fluid
to intersect an argon-ion laser. Signals are collected by a forward
angle light scatter detector, a side-scatter detector
(1), and multiple fluorescence emission detectors
(24). The signals are amplified and converted to
digital form for analysis and display on a computer screen.
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DNA Content Analysis
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The measurement of cellular DNA content by flow cytometry
uses fluorescent dyes, such as propidium iodide, that intercalate into
the DNA helical structure. The fluorescent signal is directly
proportional to the amount of DNA in the nucleus and can identify gross
gains or losses in DNA. Abnormal DNA content, also known as "DNA
content aneuploidy", can be determined in a tumor cell population.
DNA aneuploidy generally is associated with malignancy; however,
certain benign conditions may appear aneuploid (7)(8)(9)(10)(11)(12). DNA
aneuploidy correlates with a worse prognosis in many types of cancer
but is associated with improved survival in rhabdomyosarcoma,
neuroblastoma, multiple myeloma, and childhood acute lymphoblastic
leukemia
(ALL)1
(11)(13)(14)(15)(16). In multiple myeloma, ALL,
and myelodysplastic syndromes, hypodiploid tumors cells portend a poor
prognosis. In contrast, hyperdiploid cells in ALL have a better
prognosis (11)(13). For many hematologic
malignancies, there are conflicting reports regarding the independent
prognostic value of DNA content analysis. Although conventional
cytogenetics can detect smaller DNA content differences, flow cytometry
allows more rapid analysis of a larger number of cells.
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Immunophenotyping Applications in Hematology
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The distributed nature of the hematopoietic system makes it
amenable to flow cytometric analysis. Many surface proteins and
glycoproteins on erythrocytes, leukocytes, and platelets have been
studied in great detail. The availability of monoclonal antibodies
directed against these surface proteins permits flow cytometric
analysis of erythrocytes, leukocytes, and platelets. Antibodies against
intracellular proteins such as myeloperoxidase and terminal
deoxynucleotidyl transferase are also commercially available and permit
analysis of an increasing number of intracellular markers.
erythrocyte analysis
The use of flow cytometry for the detection and quantification of
fetal red cells in maternal blood has increased in recent years.
Currently in the United States, rhesus D-negative women receive
prophylactic Rh-immune globulin at 28 weeks and also within
72 h of delivery (17). The standard single dose is
enough to prevent alloimmunization from ~15 mL of fetal rhesus D+ red
cells. If feto-maternal hemorrhage is suspected, the mothers blood is
tested for the presence and quantity of fetal red cells, and an
appropriate amount of Rh-immune globulin is administered. The
quantitative test most frequently used in clinical laboratories is the
Kleihauer-Betke acid-elution test. This test is fraught with
interobserver and interlaboratory variability, and is tedious and
time-consuming (18). The use of flow cytometry for the
detection of fetal cells is much more objective, reproducible, and
sensitive than the Kleihauer-Betke test (19)(20)(21).
Fluorescently labeled antibodies to the rhesus (D) antigen can be used,
or more recently, antibodies directed against hemoglobin F
(19)(20)(21)(22)(23)(24)(25)(26)(27). This intracellular approach, which uses
permeabilization of the red cell membrane and an antibody to the
chain of human hemoglobin, is precise and sensitive (21).
This method has the ability to distinguish fetal cells from F-cells
(adult red cells with small amounts of hemoglobin F). Fig. 2
is a histogram of a positive test for feto-maternal hemorrhage.
Although the flow cytometry method is technically superior to the
Kleihauer-Betke test, cost, instrument availability, and stat access
may limit its practical utility.

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Figure 2. Hemoglobin F test for feto-maternal hemorrhage.
Most adult RBCs do not have any hemoglobin F and are included in the
large peak on the left. A few adult red cells
have a small amount of hemoglobin F and are called F
cells. Higher quantities of hemoglobin F in fetal
cells yield a higher fluorescence signal and allow
discrimination between fetal cells and adult F cells.
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Paroxysmal nocturnal hemoglobinuria (PNH) is an acquired clonal stem
cell disorder that leads to intravascular hemolysis with associated
thrombotic and infectious complications. PNH can arise in the setting
of aplastic anemia and may be followed by acute leukemia
(28). The disease is caused by deficient biosynthesis of a
glycosylphosphatidylinositol linker that anchors several complement and
immunoregulatory surface proteins on erythrocytes, monocytes,
neutrophils, lymphocytes, and platelets (28)(29)(30)(31). On
erythrocytes, deficiencies of decay-accelerating factor and
membrane-inhibitor of reactive lysis render red cells
susceptible to complement-mediated lysis
(30)(31). Conventional laboratory tests for the
diagnosis of PNH include the sugar water test and the Hams acid
hemolysis test (32). Problems associated with these tests
include stringent specimen requirements and limited specificity.
Antibodies to CD55 and CD59 are specific for decay-accelerating factor
and membrane-inhibitor of reactive lysis, respectively, and can be
analyzed by flow cytometry to make a definitive diagnosis of PNH
(29)(33)(34)(35). In affected patients, two or more
populations of erythrocytes can be readily identified, with different
degrees of expression of CD55 and CD59 (Fig. 3
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Figure 3. Diagnosis of PNH.
Control individuals (A) show high expression of CD55 and
CD59 on all red cells. In PNH (B), some stem cell clones
produce RBCs with decreased expression of CD55 and CD59. In the PNH
patient (B), two distinct populations are present:
normal red cells with high CD55 and CD59 expression and a second
population with low CD55 and CD59 expression.
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Reticulocyte counts are based on identification of residual ribosomes
and RNA in immature nonnucleated red blood cells (RBCs). Traditionally,
a blood smear is stained with a dye that precipitates the nucleic acid,
and the cells are counted manually (36). This method is
subjective, imprecise, labor-intensive, and tedious. The flow
cytometric enumeration of reticulocytes uses fluorescent dyes that bind
the residual RNA, such as thiazole orange
(37)(38). This method provides excellent
discrimination between reticulocytes and mature RBCs, with greater
precision, sensitivity, and reproducibility than the traditional method
(37)(38). However, Howell-Jolley bodies (a
remnant of nuclear DNA) are not distinguished from reticulocytes
(39). Because the fluorescence intensity is directly
proportional to the amount of RNA and related to the immaturity of the
RBC, a reticulocyte maturity index has been used clinically to assess
bone marrow engraftment and erythropoietic activity and to help
classify anemias
(34)(38)(40)(41). Some
current automated cell counters use similar technology to estimate
reticulocyte counts (42).
In the blood bank, flow cytometry can be used as a
complementary or replacement test for red cell immunology, including
RBC-bound immunoglobulins and red cell antigens (43). In
multiply transfused patients, determining the recipients blood type
can be very difficult. Flow cytometry has been used to accurately
identify and phenotype the recipients red cells (44). Flow
cytometry is being used increasingly in the blood bank to assess
leukocyte contamination in leukocyte-reduced blood products
(45)(46).
leukocyte analysis
Immunologic monitoring of HIV-infected patients is a mainstay of
the clinical flow cytometry laboratory. HIV infects helper/inducer T
lymphocytes via the CD4 antigen. Infected lymphocytes may be lysed when
new virions are released or may be removed by the cellular immune
system. As HIV disease progresses, CD4-positive T lymphocytes decrease
in total number. The absolute CD4 count provides a powerful laboratory
measurement for predicting, staging, and monitoring disease progression
and response to treatment in HIV-infected individuals. Quantitative
viral load testing is a complementary test for clinical monitoring of
disease and is correlated inversely to CD4 counts
(47)(48). However, CD4 counts directly assess
the patients immune status and not just the amount of virus. It is
likely that both CD4 T-cell enumeration and HIV viral load will
continue to be used for diagnosis, prognosis, and therapeutic
management of HIV-infected persons.
Perhaps the best example of simultaneous analysis of multiple
characteristics by flow cytometry involves the immunophenotyping of
leukemias and lymphomas. Immunophenotyping as part of the diagnostic
work-up of hematologic malignancies offers a rapid and effective means
of providing a diagnosis. The ability to analyze multiple cellular
characteristics, along with new antibodies and gating strategies, has
substantially enhanced the utility of flow cytometry in the diagnosis
of leukemias and lymphomas. Different leukemias and lymphomas often
have subtle differences in their antigen profiles that make them ideal
for analysis by flow cytometry. Diagnostic interpretations depend on a
combination of antigen patterns and fluorescence intensity. Several
recent review articles are available (49)(50)(51)(52)(53)(54)(55)(56)(57)(58)(59)(60). Flow
cytometry is very effective in distinguishing myeloid and lymphoid
lineages in acute leukemias and minimally differentiated leukemias.
Additionally, CD45/side scatter gating often can better isolate the
blast population for more definitive phenotyping than is possible with
forward scatter/side scatter gating. Fig. 4
is an example of CD45/side scatter gating for an acute myeloid
leukemia. Although most acute myeloid leukemias are difficult to
classify by phenotype alone, flow cytometry can be useful in
distinguishing certain acute myeloid leukemias, such as acute
promyelocytic leukemia (61)(62). Flow cytometry
can also be used to identify leukemias that may be resistant to therapy
(63). In ALL, phenotype has been shown to correlate strongly
with outcome (64)(65).

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Figure 4. Immunophenotyping of acute myeloid leukemia.
(Left), CD45/side scatter gating allows discrimination
between multiple populations of leukocytes in peripheral blood.
Region A, mature lymphocytes; region B,
mature monocytes; region C, mature granulocytes;
region D, immature myeloid cells.
(Right), the population in region D from
the left panel expresses CD13, a myeloid marker, and
CD34, a stem cell marker. The co-expression of these two markers in the
peripheral blood is highly suggestive of an acute myeloid leukemia.
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The B-cell lymphoproliferative disorders often have specific antigen
patterns. The use of a wide range of antibodies allows clinicians to
make specific diagnoses based on patterns of antigen
expression. Table 2
lists some of the common phenotypes expressed by various B-cell
lymphoproliferative disorders. Not only is the presence or absence of
antigens useful in making specific diagnoses, the strength of antigen
expression can also aid in diagnosis. One example is the weak
expression of CD20 and immunoglobulin light chains commonly seen in
chronic lymphocytic leukemia. Flow cytometry is particularly good at
identifying clonality in B-cell populations. Although T-cell neoplasms
may exhibit a predominance of antigens CD4 or CD8, these
antigens should not be considered as surrogate markers of clonality.
The use of antibodies to the T-cell receptor family may
occasionally be helpful in a small percentage of cases; however, many
reactive processes can show expansion of particular T-cell receptor
clones (66)(67)(68)(69). Antigen deletions are common in
T-cell lymphomas and may suggest neoplasia, but the only way to
definitively diagnose T-cell clonality is by molecular methods. Flow
cytometry can be used for lymphoma phenotyping of fine needle
aspirates, and is a powerful adjunct to cytologic diagnosis
(70). The high sensitivity and capacity for simultaneous
analysis of multiple characteristics make flow cytometry useful for the
detection of minimal residual disease, especially if abnormal patterns
of antigen expression are present (71)(72)(73)(74)(75). Flow cytometry
is not recommended for the diagnosis of Hodgkin lymphoma,
chronic myelogenous leukemia, or myelodysplastic syndrome, although
disease progression in the latter two conditions can often be
monitored.
Neutropenia may be immune or nonimmune in nature. The work-up
frequently entails a bone marrow examination. Immune neutropenia may
result from granulocyte-specific autoantibodies, granulocyte-specific
alloantibodies, or transfusion-related anti-HLA antibodies.
Flow cytometry can readily identify anti-neutrophil
antibodies that are either bound to granulocytes or free in plasma
(76). Autoimmune neutropenias may develop in patients with
autoimmune disorders such as Felty syndrome, systemic lupus
erythematosus, and Hashimoto thyroiditis. When immune-related, flow
cytometry can detect anti-neutrophil antibodies and confirm the origin
of neutropenia, possibly eliminating the need for a bone marrow
procedure. Conversely, the absence of anti-neutrophil antibodies
narrows the differential diagnosis to nonimmune causes such as bone
marrow failure, myelodysplasia, or marrow-infiltrative processes.
Functional deficiencies of leukocytes can be assessed by flow
cytometry. Assays for oxidative burst, phagocytosis, opsonization,
adhesion, and structure are available (77). One clinical
example measures neutrophil adhesion molecules central to a
diagnosis of leukocyte adhesion deficiency syndrome type I
(78). This syndrome is characterized by an immunodeficiency
related to defective neutrophil and monocyte migration to sites of
inflammation. The disorder is caused by a congenital deficiency of the
leukocyte ß2 integrin receptor complex (CD11/CD18 antigen complex) on
the myeloid cell surface. This receptor complex binds endothelial cell
ligands such as intercellular adhesion molecule-1 (CD54
antigen), which is necessary for neutrophil adherence and
transendothelial migration (78)(79). Flow
cytometry can be used to identify neutrophils that lack the CD11/CD18
antigen complex to establish a diagnosis that is otherwise difficult to
make.
platelet analysis
The analysis of platelets by flow cytometry is becoming more
common in both research and clinical laboratories. Platelet-associated
immunoglobulin assays by flow cytometry can be direct or indirect
assays, similar to other platelet-associated immunoglobulin
immunoassays. In autoimmune thrombocytopenic purpura, free serum
antibodies are not found as frequently as platelet-bound antibodies
(80)(81)(82)(83). In contrast, in cases of alloantibody formation,
serum antibodies may be detected without evidence of
platelet-associated antibodies (84). Flow cytometry is an
excellent method for direct analysis of platelet-bound antibodies, and
it has also been shown to be of benefit in detection of free plasma
antibodies (81)(85).
The use of thiazole orange, a fluorescent dye that binds RNA, allows
immature platelets (also referred to as reticulated platelets) to be
quantified (86)(87)(88). The reticulated platelet count can be
used to determine the rate of thrombopoiesis. This measurement can
separate unexplained thrombocytopenias into those with increased
destruction and those with defects in platelet production.
The pathogenesis and molecular defects of many primary
thrombocytopathies are well known and relate to defects in structural
or functional glycoproteins, such as the abnormal expression of
gpIIb/IIIa in Glanzmann thrombasthenia and gpIb in Bernard-Soulier
disease (89)(90)(91)(92)(93)(94). Flow cytometry is a rapid and useful
method of obtaining a diagnosis.
Until recently, functional analysis of platelet activation was used
primarily in research. Many immunological markers of platelet
activation have been described, and the commercial availability of
antibodies permits flow cytometric determination of platelet activation
(95)(96)(97). Platelet activation may be clinically important in
stored blood components, after cardiopulmonary bypass and renal
dialysis, and in the treatment of patients with myocardial infarction
or thrombotic events.
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Quantification of Soluble Molecules
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Soluble antigens or antibodies can be quantified by flow cytometry
if standard cells or beads are used. For example, OKT3 is a mouse
anti-human antibody useful in treating transplant rejection.
Circulating concentrations of OKT3 can be quantified by incubating with
normal CD3-positive lymphocytes, followed by a fluorescently labeled
anti-mouse antibody (98). Fluorescence values are compared
to a calibration curve generated with known amounts of OKT3.
Recently, multiplex assays for several antigens have become possible by
the use of beads indexed by incorporating two different dyes
(99)(100)(101)(102).
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Summary
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Flow cytometry is a powerful technique for correlating multiple
characteristics on single cells. This qualitative and quantitative
technique has made the transition from a research tool to standard
clinical testing. Applications in hematology include DNA content
analysis, leukemia and lymphoma phenotyping, immunologic monitoring of
HIV-infected individuals, and assessment of structural and functional
properties of erythrocytes, leukocytes, and platelets. Smaller, less
expensive instruments and an increasing number of clinically useful
antibodies are creating more opportunities for routine clinical
laboratories to use flow cytometry in the diagnosis and management of
disease.
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Footnotes
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1 Nonstandard abbreviations: ALL, acute lymphoblastic leukemia; PNH, paroxysmal nocturnal hemoglobinuria; and RBC, red blood cell. 
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